Evidence map›Paper›PMID 25977459›Full record

ArticleGenome biology and evolution2015

The Origin and Evolution of the Plant Cell Surface: Algal Integrin-Associated Proteins and a New Family of Integrin-Like Cytoskeleton-ECM Linker Proteins.

Burkhard Becker, Jean Michel Doan, Brandon Wustman, Eric J Carpenter, Li Chen, Yong Zhang, Gane K-S Wong, Michael Melkonian

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Integrins in disguise - mechanosensors inMicrobial cell (Graz, Austria) · 2019
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Burkhard BeckerBiozentrum Köln, Botanical Institute, Universität zu Köln, Germany b.becker@uni-koeln.de.
Jean Michel DoanBiozentrum Köln, Botanical Institute, Universität zu Köln, Germany.
Brandon WustmanBiozentrum Köln, Botanical Institute, Universität zu Köln, Germany.
Eric J CarpenterDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.
Li ChenBGI-Shenzhen, Bei Shan Industrial Zone, Shenzhen, China.
Yong ZhangBGI-Shenzhen, Bei Shan Industrial Zone, Shenzhen, China.
Gane K-S WongDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada BGI-Shenzhen, Bei Shan Industrial Zone, Shenzhen, China Department of Medicine, University of Alberta, Edmonton, Alberta, Canada.
Michael MelkonianBiozentrum Köln, Botanical Institute, Universität zu Köln, Germany.
University of Cologne · DEUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The extracellular matrix of scaly green flagellates consists of small organic scales consisting of polysaccharides and scale-associated proteins (SAPs). Molecular phylogenies have shown that these organisms represent the ancestral stock of flagellates from which all green plants (Viridiplantae) evolved. The molecular characterization of four different SAPs is presented. Three SAPs are type-2 membrane proteins with an arginine/alanine-rich short cytoplasmic tail and an extracellular domain that is most likely of bacterial origin. The fourth protein is a filamin-like protein. In addition, we report the presence of proteins similar to the integrin-associated proteins α-actinin (in transcriptomes of glaucophytes and some viridiplants), LIM-domain proteins, and integrin-associated kinase in transcriptomes of viridiplants, glaucophytes, and rhodophytes. We propose that the membrane proteins identified are the predicted linkers between scales and the cytoskeleton. These proteins are present in many green algae but are apparently absent from embryophytes. These proteins represent a new protein family we have termed gralins for green algal integrins. Gralins are absent from embryophytes. A model for the evolution of the cell surface proteins in Plantae is discussed.

Indexed as

ChlorophytaAlgal ProteinsComputer SimulationEvolution, MolecularMembrane GlycoproteinsMicrofilament ProteinsPlant ProteinsProtein Structure, TertiarySequence Homology, Amino AcidAlgal ProteinsMembrane GlycoproteinsMicrofilament ProteinsPlant ProteinsactininfilaminGlaucophytagralinRhodophytaViridiplantae

Identifiers

PMID25977459
PMCPMC4494055
OpenAlexW1904457353

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.