Evidence map›Paper›PMID 25972879›Full record

ArticleFrontiers in plant science2015

Garlic (Allium sativum L.) fertility: transcriptome and proteome analyses provide insight into flower and pollen development.

Einat Shemesh-Mayer, Tomer Ben-Michael, Neta Rotem, Haim D Rabinowitch, Adi Doron-Faigenboim, Arkadiusz Kosmala, Dawid Perlikowski, Amir Sherman, Rina Kamenetsky

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Identification of male-fertility geneFrontiers in plant science · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Integrated Genomic and Transcriptomic Elucidation of Flowering in Garlic.International journal of molecular sciences · 2022
    Article
  10. Article
  11. Frontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Integrative analysis of transcriptomic and proteomic changes related to male sterility inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  16. Article
  17. Omics approaches inPeerJ · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Einat Shemesh-MayerAgricultural Research Organization, The Volcani Center, Institute of Plant Science Bet Dagan, Israel ; The Robert H. Smith Faculty of Agriculture, Food, and Environment, The Robert H. Smith Institute of Plant Science and Genetics in Agriculture, The Hebrew University of Jerusalem Rehovot, Israel.
Tomer Ben-MichaelAgricultural Research Organization, The Volcani Center, Institute of Plant Science Bet Dagan, Israel ; The Robert H. Smith Faculty of Agriculture, Food, and Environment, The Robert H. Smith Institute of Plant Science and Genetics in Agriculture, The Hebrew University of Jerusalem Rehovot, Israel.
Neta RotemThe Robert H. Smith Faculty of Agriculture, Food, and Environment, The Robert H. Smith Institute of Plant Science and Genetics in Agriculture, The Hebrew University of Jerusalem Rehovot, Israel.
Haim D RabinowitchThe Robert H. Smith Faculty of Agriculture, Food, and Environment, The Robert H. Smith Institute of Plant Science and Genetics in Agriculture, The Hebrew University of Jerusalem Rehovot, Israel.
Adi Doron-FaigenboimAgricultural Research Organization, The Volcani Center, Institute of Plant Science Bet Dagan, Israel.
Arkadiusz KosmalaDepartment of Environmental Stress Biology, Institute of Plant Genetics of the Polish Academy of Sciences Poznan, Poland.
Dawid PerlikowskiDepartment of Environmental Stress Biology, Institute of Plant Genetics of the Polish Academy of Sciences Poznan, Poland.
Amir ShermanAgricultural Research Organization, The Volcani Center, Institute of Plant Science Bet Dagan, Israel.
Rina KamenetskyAgricultural Research Organization, The Volcani Center, Institute of Plant Science Bet Dagan, Israel.
Smith Institute · GBAgricultural Research Organization · ILInstitute of Plant Genetics, Polish Academy of Sciences · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Commercial cultivars of garlic, a popular condiment, are sterile, making genetic studies and breeding of this plant challenging. However, recent fertility restoration has enabled advanced physiological and genetic research and hybridization in this important crop. Morphophysiological studies, combined with transcriptome and proteome analyses and quantitative PCR validation, enabled the identification of genes and specific processes involved in gametogenesis in fertile and male-sterile garlic genotypes. Both genotypes exhibit normal meiosis at early stages of anther development, but in the male-sterile plants, tapetal hypertrophy after microspore release leads to pollen degeneration. Transcriptome analysis and global gene-expression profiling showed that >16,000 genes are differentially expressed in the fertile vs. male-sterile developing flowers. Proteome analysis and quantitative comparison of 2D-gel protein maps revealed 36 significantly different protein spots, 9 of which were present only in the male-sterile genotype. Bioinformatic and quantitative PCR validation of 10 candidate genes exhibited significant expression differences between male-sterile and fertile flowers. A comparison of morphophysiological and molecular traits of fertile and male-sterile garlic flowers suggests that respiratory restrictions and/or non-regulated programmed cell death of the tapetum can lead to energy deficiency and consequent pollen abortion. Potential molecular markers for male fertility and sterility in garlic are proposed.

Indexed as

energy deficiencygene expressionmicrosporogenesismitochondrial dysfunctionprotein profilingtapetum

Identifiers

PMID25972879
PMCPMC4411974
OpenAlexW2008544269

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.