Evidence map›Paper›PMID 25972837›Full record

ArticleFrontiers in neurology2015

DNA methylation perturbations in genes involved in polyunsaturated Fatty Acid biosynthesis associated with depression and suicide risk.

Fatemeh Haghighi, Hanga Galfalvy, Sean Chen, Yung-Yu Huang, Thomas B Cooper, Ainsley K Burke, Maria A Oquendo, J John Mann, M Elizabeth Sublette

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neurology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
  2. Molecular Changes Associated with Suicide.International journal of molecular sciences · 2023
    Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Role of Long Chain Fatty Acids in Developmental Programming in Ruminants.Animals : an open access journal from MDPI · 2021
    Review
  10. Article
  11. Review
  12. A Brain-Centric Model of Suicidal Behavior.The American journal of psychiatry · 2020
    Article
  13. Article
  14. Lipids and Suicide Risk.Current topics in behavioral neurosciences · 2020
    Article
  15. The Role of Epigenetic Dysregulation in Suicidal Behaviors.Current topics in behavioral neurosciences · 2020
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Fatemeh HaghighiDepartment of Psychiatry, James J. Peters Veterans Affairs Medical Center , New York, NY , USA ; Fishberg Department of Neuroscience, Icahn School of Medicine at Mount Sinai , New York, NY , USA ; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai , New York, NY , USA.
Hanga GalfalvyDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Biostatistics, New York State Psychiatric Institute , New York, NY , USA.
Sean ChenFishberg Department of Neuroscience, Icahn School of Medicine at Mount Sinai , New York, NY , USA ; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai , New York, NY , USA.
Yung-Yu HuangDivision of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA.
Thomas B CooperDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA ; Nathan S. Kline Institute for Psychiatric Research , Orangeburg, NY , USA.
Ainsley K BurkeDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA.
Maria A OquendoDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA.
J John MannDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA ; Department of Radiology, Columbia University College of Physicians and Surgeons , New York, NY , USA.
M Elizabeth SubletteDepartment of Psychiatry, Columbia University College of Physicians and Surgeons , New York, NY , USA ; Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute , New York, NY , USA.
New York Psychoanalytic Society and Institute · USColumbia University · USAllen Institute for Brain Science · USIcahn School of Medicine at Mount Sinai · USNathan Kline Institute for Psychiatric Research · USNew York State Psychiatric Institute

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyunsaturated fatty acid (PUFA) status has been associated with neuropsychiatric disorders, including depression and risk of suicide. Long-chain PUFAs (LC-PUFAs) are obtained in the diet or produced by sequential desaturation and elongation of shorter-chain precursor fatty acids linoleic acid (LA, 18:2n-6) and α-linolenic acid (ALA, 18:3n-3). We compared DNA methylation patterns in genes involved in LC-PUFA biosynthesis in major depressive disorder (MDD) with (n = 22) and without (n = 39) history of suicide attempt, and age- and sex-matched healthy volunteers (n = 59). Plasma levels of selected PUFAs along the LC-PUFA biosynthesis pathway were determined by transesterification and gas chromatography. CpG methylation levels for the main human LC-PUFA biosynthetic genes, fatty acid desaturases 1 (Fads1) and 2 (Fads2), and elongation of very long-chain fatty acids protein 5 (Elovl5), were assayed by bisulfite pyrosequencing. Associations between PUFA levels and diagnosis or suicide attempt status did not survive correction for multiple testing. However, MDD diagnosis and suicide attempts were significantly associated with DNA methylation in Elovl5 gene regulatory regions. Also the relative roles of PUFA levels and DNA methylation with respect to diagnostic and suicide attempt status were determined by least absolute shrinkage and selection operator logistic regression analyses. We found that PUFA associations with suicide attempt status were explained by effects of Elovl5 DNA methylation within the regulatory regions. The observed link between plasma PUFA levels, DNA methylation, and suicide risk may have implications for modulation of disease-associated epigenetic marks by nutritional intervention.

Indexed as

DNA methylationelongation of very long-chain fatty acids protein 5epigeneticsFads1 fatty acid desaturasemajor depressive disorderpolyunsaturated omega-3/omega-6 fatty acidssuicide

Identifiers

PMID25972837
PMCPMC4412056
OpenAlexW1987155494

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.