Evidence map›Paper›PMID 25971977›Full record

ArticleThe Journal of biological chemistry2015

Three Pseudomonas putida FNR Family Proteins with Different Sensitivities to O2.

Susan A Ibrahim, Jason C Crack, Matthew D Rolfe, José Manuel Borrero-de Acuña, Andrew J Thomson, Nick E Le Brun, Max Schobert, Melanie R Stapleton, Jeffrey Green

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. The Impact of Chromate onFrontiers in microbiology · 2022
    Article
  3. Transcriptome Changes inInternational journal of molecular sciences · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Biochemical properties of Paracoccus denitrificans FnrP: reactions with molecular oxygen and nitric oxide.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Susan A IbrahimFrom the Krebs Institute, Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom.
Jason C Crackthe Centre for Molecular and Structural Biochemistry, School of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom, and.
Matthew D RolfeFrom the Krebs Institute, Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom.
José Manuel Borrero-de AcuñaInstitut für Mikrobiologie, Technische Universität, D-38106 Braunschweig, Germany.
Andrew J Thomsonthe Centre for Molecular and Structural Biochemistry, School of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom, and.
Nick E Le Brunthe Centre for Molecular and Structural Biochemistry, School of Chemistry, University of East Anglia, Norwich, NR4 7TJ, United Kingdom, and.
Max SchobertInstitut für Mikrobiologie, Technische Universität, D-38106 Braunschweig, Germany.
Melanie R StapletonFrom the Krebs Institute, Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom.
Jeffrey GreenFrom the Krebs Institute, Molecular Biology and Biotechnology, University of Sheffield, Sheffield, S10 2TN, United Kingdom, jeff.green@sheffield.ac.uk.
University of Sheffield · GBUniversity of East Anglia · GBTechnische Universität Braunschweig · DE

Funding

Biotechnology and Biological Sciences Research Council BB/G018960/1Biotechnology and Biological Sciences Research Council BB/G019347/1Biotechnology and Biological Sciences Research Council BB/L008114/1
6 · The paper itself

Abstract

The Escherichia coli fumarate-nitrate reduction regulator (FNR) protein is the paradigm for bacterial O2-sensing transcription factors. However, unlike E. coli, some bacterial species possess multiple FNR proteins that presumably have evolved to fulfill distinct roles. Here, three FNR proteins (ANR, PP_3233, and PP_3287) from a single bacterial species, Pseudomonas putida KT2440, have been analyzed. Under anaerobic conditions, all three proteins had spectral properties resembling those of [4Fe-4S] proteins. The reactivity of the ANR [4Fe-4S] cluster with O2 was similar to that of E. coli FNR, and during conversion to the apo-protein, via a [2Fe-2S] intermediate, cluster sulfur was retained. Like ANR, reconstituted PP_3233 and PP_3287 were converted to [2Fe-2S] forms when exposed to O2, but their [4Fe-4S] clusters reacted more slowly. Transcription from an FNR-dependent promoter with a consensus FNR-binding site in P. putida and E. coli strains expressing only one FNR protein was consistent with the in vitro responses to O2. Taken together, the experimental results suggest that the local environments of the iron-sulfur clusters in the different P. putida FNR proteins influence their reactivity with O2, such that ANR resembles E. coli FNR and is highly responsive to low concentrations of O2, whereas PP_3233 and PP_3287 have evolved to be less sensitive to O2.

Indexed as

Bacterial ProteinsMultigene FamilyOxygenPseudomonas putidaTranscription FactorsBacterial ProteinsOxygenTranscription Factorsbacterial signal transductionbacterial transcriptioniron-sulfur proteinmicrobiologytranscription factortranscription regulation

Identifiers

PMID25971977
PMCPMC4505428
OpenAlexW1598607966

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.