Evidence map›Paper›PMID 25971972›Full record

ArticleThe Journal of biological chemistry2015

Platymonas subcordiformis Channelrhodopsin-2 Function: I. THE PHOTOCHEMICAL REACTION CYCLE.

Istvan Szundi, Hai Li, Eefei Chen, Roberto Bogomolni, John L Spudich, David S Kliger

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Istvan SzundiFrom the Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064 and.
Hai Lithe Center for Membrane Biology, Department of Biochemistry and Molecular Biology, University of Texas Medical School, Houston, Texas 77030.
Eefei ChenFrom the Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064 and.
Roberto BogomolniFrom the Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064 and.
John L Spudichthe Center for Membrane Biology, Department of Biochemistry and Molecular Biology, University of Texas Medical School, Houston, Texas 77030 John.L.Spudich@uth.tmc.edu.
David S KligerFrom the Department of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064 and kliger@ucsc.edu.

Funding

Structure/Function of Microbial Sensory RhodopsinsR01GM027750 · NIGMS · YESHIVA UNIVERSITY · PI SPUDICH, JOHN LEE · 1985 to 2020
$6.6M
Studies of the Activation Mechanisms of Visual PigmentsR01EY000983 · NEI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KLIGER, DAVID S. · 1985 to 2016
$5.1M
NEI NIH HHS R01 EY000983NEI NIH HHS R01EY000983NIGMS NIH HHS R01 GM027750NIGMS NIH HHS R01GM027750
6 · The paper itself

Abstract

The photocycle kinetics of Platymonas subcordiformis channelrhodopsin-2 (PsChR2), among the most highly efficient light-gated cation channels and the most blue-shifted channelrhodopsin, was studied by time-resolved absorption spectroscopy in the 340-650-nm range and in the 100-ns to 3-s time window. Global exponential fitting of the time dependence of spectral changes revealed six lifetimes: 0.60 μs, 5.3 μs, 170 μs, 1.4 ms, 6.7 ms, and 1.4 s. The sequential intermediates derived for a single unidirectional cycle scheme based on these lifetimes were found to contain mixtures of K, L, M, O, and P molecular states, named in analogy to photointermediates in the bacteriorhodopsin photocycle. The photochemistry is described by the superposition of two independent parallel photocycles. The analysis revealed that 30% of the photoexcited receptor molecules followed Cycle 1 through the K, M, O, and P states, whereas 70% followed Cycle 2 through the K, L, M, and O states. The recovered state, R, is spectrally close, but not identical, to the dark state on the seconds time scale. The two-cycle model of this high efficiency channelrhodopsin-2 (ChR) opens new perspectives in understanding the mechanism of channelrhodopsin function.

Indexed as

ChlorophytaKineticsLightPhotochemistryRhodopsinRhodopsinchannelrhodopsinoptogeneticsphotocyclephotoreceptorphototaxisprotein dynamicrhodopsintime-resolved spectroscopyultraviolet-visible spectroscopy (UV-Vis spectroscopy)

Identifiers

PMID25971972
PMCPMC4505411

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.