Evidence map›Paper›PMID 25970247›Full record

ArticleNature2015

Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone.

Yi-Gang Tong, Wei-Feng Shi, Di Liu, Jun Qian, Long Liang, Xiao-Chen Bo, Jun Liu, Hong-Guang Ren, Hang Fan, Ming Ni and 46 more

Erratum issuedAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 108 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Epidemiology, genetic dynamics, and transmission of theEmerging microbes & infections · 2025
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  8. Article
  9. Review
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  14. The diagnostic value of metagenomic next-generation sequencing for identifyingFrontiers in cellular and infection microbiology · 2022
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

56 authors.

Yi-Gang TongState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Wei-Feng ShiInstitute of Pathogen Biology, Taishan Medical College, Taian 271000, China.
Di LiuInstitute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Jun QianKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Long LiangState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Xiao-Chen BoBeijing Key Laboratory of New Molecular Diagnostics Technology, Beijing 100850, China.
Jun LiuInstitute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Hong-Guang RenState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Hang FanState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Ming NiBeijing Key Laboratory of New Molecular Diagnostics Technology, Beijing 100850, China.
Yang SunKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Yuan JinState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Yue TengState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Zhen LiBeijing Key Laboratory of New Molecular Diagnostics Technology, Beijing 100850, China.
David KargboSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Foday DafaeSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Alex KanuSierra Leone-China Friendship Hospital, Freetown, Sierra Leone.
Cheng-Chao ChenBGI-Shenzhen, Shenzhen 518083, China.
Zhi-Heng LanBGI-Shenzhen, Shenzhen 518083, China.
Hui JiangBGI-Shenzhen, Shenzhen 518083, China.
Yang LuoWellcome Trust Sanger Institute, Cambridge CB10 1SA, UK.
Hui-Jun LuKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Xiao-Guang ZhangInstitute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Fan YangChinese Academy of Medical Sciences &Peking Union Medical College, Beijing 100730, China.
Yi HuState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Yu-Xi CaoInstitute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Yong-Qiang DengState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Hao-Xiang SuChinese Academy of Medical Sciences &Peking Union Medical College, Beijing 100730, China.
Yu SunState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Wen-Sen LiuKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Zhuang WangState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Cheng-Yu WangKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Zhao-Yang BuKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Zhen-Dong GuoKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Liu-Bo ZhangInstitute of Environmental Health and Related Product Safety, Chinese Center for Disease Control and Prevention, Beijing 100021, China.
Wei-Min NieThe No. 302 Hospital, Beijing 100039, China.
Chang-Qing BaiThe No. 307 Hospital, Beijing 100071, China.
Chun-Hua SunState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Xiao-Ping AnState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Pei-Song XuBeijing Key Laboratory of New Molecular Diagnostics Technology, Beijing 100850, China.
Xiang-Li-Lan ZhangState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Yong HuangState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Zhi-Qiang MiState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Dong YuState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Hong-Wu YaoState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Yong FengDepartment of international cooperation, National Health and Family Planning Commission, Beijing 100044, China.
Zhi-Ping XiaKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Xue-Xing ZhengKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Song-Tao YangKey Laboratory of Jilin Province for Zoonosis Prevention and Control, Changchun 130122, China.
Bing LuState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Jia-Fu JiangState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
Brima KargboSierra Leone Ministry of Health and Sanitation, Freetown, Sierra Leone.
Fu-Chu HeState Key Laboratory of Proteomics, Beijing 102206, China.
George F Gao1] Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China [2] Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China [3] Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Wu-Chun CaoState Key Laboratory of Pathogen and Biosecurity, Beijing 100071, China.
China Mobile Laboratory Testing Team in Sierra Leone

Funding

Mechanisms and consequences of CNS aneuploidies altered by fetal ethanol exposureR01AA021402 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI CHUN, JEROLD · 2013 to 2017
$1.9M
NIAAA NIH HHS R01 AA021402
6 · The paper itself

Abstract

A novel Ebola virus (EBOV) first identified in March 2014 has infected more than 25,000 people in West Africa, resulting in more than 10,000 deaths. Preliminary analyses of genome sequences of 81 EBOV collected from March to June 2014 from Guinea and Sierra Leone suggest that the 2014 EBOV originated from an independent transmission event from its natural reservoir followed by sustained human-to-human infections. It has been reported that the EBOV genome variation might have an effect on the efficacy of sequence-based virus detection and candidate therapeutics. However, only limited viral information has been available since July 2014, when the outbreak entered a rapid growth phase. Here we describe 175 full-length EBOV genome sequences from five severely stricken districts in Sierra Leone from 28 September to 11 November 2014. We found that the 2014 EBOV has become more phylogenetically and genetically diverse from July to November 2014, characterized by the emergence of multiple novel lineages. The substitution rate for the 2014 EBOV was estimated to be 1.23 × 10(-3) substitutions per site per year (95% highest posterior density interval, 1.04 × 10(-3) to 1.41 × 10(-3) substitutions per site per year), approximating to that observed between previous EBOV outbreaks. The sharp increase in genetic diversity of the 2014 EBOV warrants extensive EBOV surveillance in Sierra Leone, Guinea and Liberia to better understand the viral evolution and transmission dynamics of the ongoing outbreak. These data will facilitate the international efforts to develop vaccines and therapeutics.

Indexed as

Evolution, MolecularBase SequenceDisease OutbreaksEbolavirusEpidemiological MonitoringGenetic VariationGenome, ViralHemorrhagic Fever, EbolaHumansMolecular EpidemiologyMutation RatePhylogenyPhylogeographySierra Leone

Identifiers

PMID25970247
PMCPMC10601608

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.