Evidence map›Paper›PMID 25969696›Full record

ArticleMolecular cytogenetics2015

Terminal 18q deletions are stabilized by neotelomeres.

Roberta Santos Guilherme, Karen E Hermetz, Patrícia Teixeira Varela, Ana Beatriz Alvarez Perez, Vera Ayres Meloni, M Katharine Rudd, Leslie Domenici Kulikowski, Maria Isabel Melaragno

Abstract read
In one paragraph

Article in Molecular cytogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A comprehensive map of hotspots of de novo telomere addition inbioRxiv : the preprint server for biology · 2023
    Article
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Roberta Santos GuilhermeDepartment of Morphology and Genetics, Universidade Federal de São Paulo, Rua Botucatu 740, CEP 04023-900, São Paulo, Brazil.
Karen E HermetzDepartment of Human Genetics, Emory University School of Medicine, 615 Michael Street Northeast, GA 30322, Atlanta, USA.
Patrícia Teixeira VarelaDepartment of Biophysics, Universidade Federal de São Paulo, Rua Três de Maio 100, CEP 04023-900, São Paulo, Brazil.
Ana Beatriz Alvarez PerezDepartment of Morphology and Genetics, Universidade Federal de São Paulo, Rua Botucatu 740, CEP 04023-900, São Paulo, Brazil.
Vera Ayres MeloniDepartment of Morphology and Genetics, Universidade Federal de São Paulo, Rua Botucatu 740, CEP 04023-900, São Paulo, Brazil.
M Katharine RuddDepartment of Human Genetics, Emory University School of Medicine, 615 Michael Street Northeast, GA 30322, Atlanta, USA.
Leslie Domenici KulikowskiDepartment of Pathology, Laboratório de Citogenômica, Universidade de São Paulo, Avenida Dr. Enéas Carvalho de Aguiar 255, CEP 05403-000, São Paulo, Brazil.
Maria Isabel MelaragnoDepartment of Morphology and Genetics, Universidade Federal de São Paulo, Rua Botucatu 740, CEP 04023-900, São Paulo, Brazil.

Funding

Mechanism of subtelomeric breaksR01MH092902 · NIMH · EMORY UNIVERSITY · PI RUDD, MARY KATHARINE · 2010 to 2013
$1.6M
NIMH NIH HHS R01 MH092902
6 · The paper itself

Abstract

backgroundAll human chromosomes are capped by tandem repeat (TTAGGG)n sequences that protect them against end-to-end fusion and are essential to chromosomal replication and integrity. Therefore, after a chromosomal breakage, the deleted chromosomes must be stabilized by retaining the telomere or acquiring a new cap, by telomere healing or telomere capture. There are few reports with molecular approaches on the mechanisms involved in stabilization of 18q terminal deletions.

resultsIn this study we analyzed nine patients with 18q terminal deletion identified by G-banding and genomic array. FISH using PNA probe revealed telomeric signals in all deleted chromosomes tested. We fine-mapped breakpoints with customized arrays and sequenced six terminal deletion junctions. In all six deleted chromosomes sequenced, telomeric sequences were found directly attached to the breakpoints. Little or no microhomology was found at the breakpoints and none of the breaks sequenced were located in low copy repeat (LCR) regions, though repetitive elements were found around the breakpoints in five patients. One patient presented a more complex rearrangement with two deleted segments and an addition of 17 base pairs (bp).

conclusionsWe found that all six deleted chromosomes sequenced were probably stabilized by the healing mechanism leading to a neotelomere formation.

Indexed as

Breakpoint sequencingNeotelomereStabilization mechanismTelomere captureTelomere healingTerminal 18q deletion

Identifiers

PMID25969696
PMCPMC4427916

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.