Evidence map›Paper›PMID 25969535›Full record

ArticleThe Journal of biological chemistry2015

Tryptophan Scanning Reveals Dense Packing of Connexin Transmembrane Domains in Gap Junction Channels Composed of Connexin32.

Matthew J Brennan, Jennifer Karcz, Nicholas R Vaughn, Yvonne Woolwine-Cunningham, Adam D DePriest, Yerko Escalona, Tomas Perez-Acle, I Martha Skerrett

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Gap junction gene and protein families: Connexins, innexins, and pannexins.Biochimica et biophysica acta. Biomembranes · 2018
    Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matthew J BrennanFrom the Biology Department, State University of New York Buffalo State, Buffalo, New York 14222.
Jennifer KarczFrom the Biology Department, State University of New York Buffalo State, Buffalo, New York 14222.
Nicholas R VaughnFrom the Biology Department, State University of New York Buffalo State, Buffalo, New York 14222.
Yvonne Woolwine-Cunninghamthe Clinical and Translational Research Center, State University of New York at Buffalo, Buffalo, New York 14214.
Adam D DePriestthe Department of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York 14263.
Yerko Escalonathe Computational Biology Lab, Fundación Ciencia and Vida, 7780344 Santiago, Chile, and the Centro Interdisciplinario de Neurociencias de Valparaíso, Universidad de Valparaíso, 2360102 Valparaíso, Chile.
Tomas Perez-Aclethe Computational Biology Lab, Fundación Ciencia and Vida, 7780344 Santiago, Chile, and the Centro Interdisciplinario de Neurociencias de Valparaíso, Universidad de Valparaíso, 2360102 Valparaíso, Chile.
I Martha SkerrettFrom the Biology Department, State University of New York Buffalo State, Buffalo, New York 14222, skerreim@buffalostate.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tryptophan was substituted for residues in all four transmembrane domains of connexin32. Function was assayed using dual cell two-electrode voltage clamp after expression in Xenopus oocytes. Tryptophan substitution was poorly tolerated in all domains, with the greatest impact in TM1 and TM4. For instance, in TM1, 15 substitutions were made, six abolished coupling and five others significantly reduced function. Only TM2 and TM3 included a distinct helical face that lacked sensitivity to tryptophan substitution. Results were visualized on a comparative model of Cx32 hemichannel. In this model, a region midway through the membrane appears highly sensitive to tryptophan substitution and includes residues Arg-32, Ile-33, Met-34, and Val-35. In the modeled channel, pore-facing regions of TM1 and TM2 were highly sensitive to tryptophan substitution, whereas the lipid-facing regions of TM3 and TM4 were variably tolerant. Residues facing a putative intracellular water pocket (the IC pocket) were also highly sensitive to tryptophan substitution. Although future studies will be required to separate trafficking-defective mutants from those that alter channel function, a subset of interactions important for voltage gating was identified. Interactions important for voltage gating occurred mainly in the mid-region of the channel and focused on TM1. To determine whether results could be extrapolated to other connexins, TM1 of Cx43 was scanned revealing similar but not identical sensitivity to TM1 of Cx32.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsConnexin 43ConnexinsFemaleGap Junction beta-1 ProteinGap JunctionsLipid BilayersModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedOocytesProtein Interaction Domains and MotifsProtein SubunitsRatsConnexin 43ConnexinsGap Junction beta-1 ProteinGja1 protein, ratLipid BilayersProtein SubunitsRecombinant ProteinsTryptophancomparative modelconnexinCx32gap junctiongatinghemichannelmutagenesisTM domain interactionstransmembrane domaintryptophan scanning

Identifiers

PMID25969535
PMCPMC4498046

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.