Evidence map›Paper›PMID 25968320›Full record

ArticleDevelopment (Cambridge, England)2015

An illustrated anatomical ontology of the developing mouse lower urogenital tract.

Kylie M Georgas, Jane Armstrong, Janet R Keast, Christine E Larkins, Kirk M McHugh, E Michelle Southard-Smith, Martin J Cohn, Ekatherina Batourina, Hanbin Dan, Kerry Schneider and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 138 citations in OpenAlex.

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  14. The Role of Adenogenesis Factors in the Pathogenesis of Endometriosis.International journal of molecular sciences · 2025
    Review
  15. Müllerian anomalies and endometriosis: associations and phenotypic variations.Reproductive biology and endocrinology : RB&E · 2024
    Review
  16. Article
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  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 3 countries.

Kylie M GeorgasInstitute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4072, Australia.
Jane ArmstrongCenter for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Janet R KeastDepartment of Anatomy and Neuroscience, University of Melbourne, Parkville, Victoria 3010, Australia.
Christine E LarkinsDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32610, USA.
Kirk M McHughCentre for Molecular and Human Genetics, The Research Institute at Nationwide Children's Hospital and Division of Anatomy, The Ohio State University, Columbus, OH 43205/10, USA.
E Michelle Southard-SmithDivision of Genetic Medicine, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Martin J CohnDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL 32610, USA Department of Biology, Genetics Institute, University of Florida, Gainesville, FL 32610, USA Howard Hughes Medical Institute, University of Florida, Gainesville, FL 32610, USA.
Ekatherina BatourinaColumbia University, Department of Urology, New York, NY 10032, USA.
Hanbin DanColumbia University, Department of Urology, New York, NY 10032, USA.
Kerry SchneiderColumbia University, Department of Urology, New York, NY 10032, USA.
Dennis P BuehlerDivision of Genetic Medicine, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Carrie B WieseDivision of Genetic Medicine, Department of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Jane BrennanCenter for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Jamie A DaviesCenter for Integrative Physiology, University of Edinburgh, Edinburgh EH8 9XD, UK.
Simon D HardingMRC Human Genetics Unit, MRC IGMM, Western General Hospital, Edinburgh EH4 2XU, UK.
Richard A BaldockMRC Human Genetics Unit, MRC IGMM, Western General Hospital, Edinburgh EH4 2XU, UK.
Melissa H LittleInstitute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland 4072, Australia melissa.little@mcri.edu.au.
Chad M VezinaUniversity of Wisconsin-Madison, School of Veterinary Medicine, Madison, WI 53706, USA.
Cathy MendelsohnColumbia University, Department of Urology, New York, NY 10032, USA.
Columbia University · USUniversity of Edinburgh · GBVanderbilt University · USMRC Institute of Genetics and Molecular Medicine · GBUniversity of Florida · USUniversity of Queensland · AUThe Ohio State University · USUniversity of Melbourne · AUUniversity of Wisconsin–Madison · US

Funding

Transcriptional Regulation of Urothelial Differentiation During Homeostasis and Repair in Response to Urinary Tract InfectionU54DK104309 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JONATHAN M. BARASCH, ALI G GHARAVI · 2014 to 2026
$17.7M
Research Project: Sensory and Multisensory Contributions to AutismU54HD083211 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DYKENS, ELISABETH MAY · 2015 to 2019
$7.1M
Murine Atlas of Genitourinary Smooth Muscle DevelopmentU01DK070219 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI LESSARD, JAMES LOUIS · 2005 to 2009
$4.3M
Retinoic acid signaling controls urothelial development and regeneration.R01DK095044 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2013 to 2021
$3.5M
GUDMAP- Database and WebsiteU01DK092983 · NIDDK · UNIVERSITY OF EDINBURGH · PI BALDOCK, RICHARD ALAN · 2011 to 2016
$3.2M
Murine Atlas of Genitourinary DevelopmentU01DK070136 · NIDDK · UNIVERSITY OF QUEENSLAND · PI LITTLE, MELISSA HELEN · 2004 to 2009
$2.2M
Neural Crest Contributions to the Lower Urinary TractR01DK078158 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SOUTHARD-SMITH, E MICHELLE · 2007 to 2017
$2.1M
Targets of Endocrine Disruptors in External GenitaliaR01ES017099 · NIEHS · UNIVERSITY OF FLORIDA · PI COHN, MARTIN J · 2010 to 2014
$2.0M
3D imaging and deep sequencing of gene expression in the genital tubercleU01DK094523 · NIDDK · UNIVERSITY OF FLORIDA · PI COHN, MARTIN J · 2011 to 2015
$1.7M
GENERATING AN ATLAS OF THE DEVELOPING HUMAN URINARY OUTFLOW TRACT.U01DK110803 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2016 to 2020
$1.6M
Generating molecular markers that selectively label urothelial sub-populationsU01DK094530 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2011 to 2015
$1.6M
Model of Congenital Obstructive Nephropathy-Biomarker & Therapeutic DevelopmentR01DK085242 · NIDDK · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI BATES, CARLTON MATTHEW, MCHUGH, KIRK M. · 2010 to 2014
$1.6M
Medical Research Council MC_PC_U127527203NICHD NIH HHS U54 HD083211NIDDK NIH HHS DK070136NIDDK NIH HHS DK083425NIDDK NIH HHS DK092983NIDDK NIH HHS DK094523NIDDK NIH HHS K01 DK083425NIDDK NIH HHS R01 DK078158NIDDK NIH HHS R01 DK085242NIDDK NIH HHS R01DK085242NIDDK NIH HHS R01 DK095044NIDDK NIH HHS R56 DK078158NIDDK NIH HHS U01 DK070136NIDDK NIH HHS U01 DK070219NIDDK NIH HHS U01 DK092983NIDDK NIH HHS U01 DK094479NIDDK NIH HHS U01 DK094523NIDDK NIH HHS U01 DK094530NIDDK NIH HHS U01 DK101038NIDDK NIH HHS U01 DK110803NIDDK NIH HHS U54 DK104309NIDDK NIH HHS UO1 DK094479NIEHS NIH HHS ES017099NIEHS NIH HHS R01 ES017099
6 · The paper itself

Abstract

Malformation of the urogenital tract represents a considerable paediatric burden, with many defects affecting the lower urinary tract (LUT), genital tubercle and associated structures. Understanding the molecular basis of such defects frequently draws on murine models. However, human anatomical terms do not always superimpose on the mouse, and the lack of accurate and standardised nomenclature is hampering the utility of such animal models. We previously developed an anatomical ontology for the murine urogenital system. Here, we present a comprehensive update of this ontology pertaining to mouse LUT, genital tubercle and associated reproductive structures (E10.5 to adult). Ontology changes were based on recently published insights into the cellular and gross anatomy of these structures, and on new analyses of epithelial cell types present in the pelvic urethra and regions of the bladder. Ontology changes include new structures, tissue layers and cell types within the LUT, external genitalia and lower reproductive structures. Representative illustrations, detailed text descriptions and molecular markers that selectively label muscle, nerves/ganglia and epithelia of the lower urogenital system are also presented. The revised ontology will be an important tool for researchers studying urogenital development/malformation in mouse models and will improve our capacity to appropriately interpret these with respect to the human situation.

Indexed as

AnimalsMiceModels, AnimalUrethraUrinary BladderUrinary TractUrogenital SystemBladderExternal genitaliaGenital tubercleLower reproductive tractLower urinary tractMouse embryogenesisMurine urogenital system developmentPelvic ganglionPelvic urethraPhallic urethraProstate glandTrigoneUreterUrethraUrethral plateUrogenital sinus

Identifiers

PMID25968320
PMCPMC4440924
OpenAlexW2135926514

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.