Evidence map›Paper›PMID 25967280›Full record

ArticleJournal of neurogenetics2015

A histone modification identifies a DNA element controlling slo BK channel gene expression in muscle.

Xiaolei Li, Alfredo Ghezzi, Harish R Krishnan, Jascha B Pohl, Arun Y Bohm, Nigel S Atkinson

Open access · greenAbstract read
In one paragraph

Article in Journal of neurogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Xiaolei Lia School of Biological Sciences, Nanyang Technological University , Singapore.
Alfredo Ghezzib Department of Neuroscience and The Waggoner Center for Alcohol and Addiction Research , The University of Texas at Austin , Austin, Texas , USA.
Harish R Krishnanc Department of Psychiatry , University of Illinois at Chicago and Jesse Brown VA Medical Center , Chicago , IL , USA.
Jascha B Pohlb Department of Neuroscience and The Waggoner Center for Alcohol and Addiction Research , The University of Texas at Austin , Austin, Texas , USA.
Arun Y Bohmb Department of Neuroscience and The Waggoner Center for Alcohol and Addiction Research , The University of Texas at Austin , Austin, Texas , USA.
Nigel S Atkinsonb Department of Neuroscience and The Waggoner Center for Alcohol and Addiction Research , The University of Texas at Austin , Austin, Texas , USA.
The University of Texas at Austin · USNanyang Technological University · SGUniversity of Illinois Chicago · US

Funding

Epigenetic modification as a mechanism to produce functional toleranceR01AA018037 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI ATKINSON, NIGEL S · 2008 to 2018
$3.3M
NIAAA NIH HHS R01 AA018037
6 · The paper itself

Abstract

The slo gene encodes the BK-type Ca(2+)-activated K(+) channels. In Drosophila, expression of slo is induced by organic solvent sedation (benzyl alcohol and ethanol), and this increase in neural slo expression contributes to the production of functional behavioral tolerance (inducible resistance) to these drugs. Within the slo promoter region, we observed that benzyl alcohol sedation produces a localized spike of histone acetylation over a 65-nucleotide (65-n) conserved DNA element called 55b. Changes in histone acetylation are commonly the consequence of transcription factor activity, and previously, a localized histone acetylation spike was used to successfully map a DNA element involved in benzyl alcohol-induced slo expression. To determine whether the 55b element was also involved in benzyl alcohol-induced neural expression of slo, we deleted it from the endogenous slo gene by homologous recombination. Flies lacking the 55b element were normal with respect to basal and benzyl alcohol-induced neural slo expression, the capacity to acquire and maintain functional tolerance, their threshold for electrically-induced seizures, and most slo-related behaviors. Removal of the 55b element did however increase the level of basal expression from the muscle/tracheal cell-specific slo core promoter and produced a slight increase in overall locomotor activity. We conclude that the 55b element is involved in control of slo expression from the muscle and tracheal-cell promoter but is not involved in the production of functional benzyl alcohol tolerance.

Indexed as

AnimalsBenzyl AlcoholDrosophilaDrosophila ProteinsDrug ToleranceGene ExpressionHistone CodeLarge-Conductance Calcium-Activated Potassium ChannelsMuscle, SkeletalPromoter Regions, GeneticBenzyl AlcoholDrosophila ProteinsLarge-Conductance Calcium-Activated Potassium Channelsslo protein, DrosophilaBehaviorDNA elementDrosophilahistone marksion channeltranscription

Identifiers

PMID25967280
PMCPMC4771021
OpenAlexW1819073679

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.