ArticlePloS one2015
Complete Chloroplast Genome Sequence of Tartary Buckwheat (Fagopyrum tataricum) and Comparative Analysis with Common Buckwheat (F. esculentum).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.
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72 citing papers in PubMed.
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- Phylogenetic placement of the monotypic Baolia (Amaranthaceae s.l.) based on morphological and molecular evidence.BMC plant biology · 2024Article
- Extreme Reconfiguration of Plastid Genomes in Papaveraceae: Rearrangements, Gene Loss, Pseudogenization, IR Expansion, and Repeats.International journal of molecular sciences · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
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- The First Complete Chloroplast Genome ofGenes · 2023Article
- The pan-plastome of tartary buckwheat (fagopyrum tataricum): key insights into genetic diversity and the history of lineage divergence.BMC plant biology · 2023Article
- The climate changes promoted the chloroplast genomic evolution of Dendrobium orchids among multiple photosynthetic pathways.BMC plant biology · 2023Article
- Development of InDels markers for the identification of cytoplasmic male sterility inFrontiers in plant science · 2023Article
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- Complete Mitochondrial Genome Sequences of Korean Phytophthora infestans Isolates and Comparative Analysis of Mitochondrial Haplotypes.The plant pathology journal · 2022Article
- Plastome comparison and phylogenomics of Fagopyrum (Polygonaceae): insights into sequence differences between Fagopyrum and its related taxa.BMC plant biology · 2022Article
- Effects of geographic isolation on the Bulbophyllum chloroplast genomes.BMC plant biology · 2022Article
- The Complete Chloroplast Genome Sequence ofCurrent genomics · 2022Article
- Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships.BMC genomics · 2022Article
12 more citing papers are in PubMed but not listed here.
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7 authors.
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Abstract
We report the chloroplast (cp) genome sequence of tartary buckwheat (Fagopyrum tataricum) obtained by next-generation sequencing technology and compared this with the previously reported common buckwheat (F. esculentum ssp. ancestrale) cp genome. The cp genome of F. tataricum has a total sequence length of 159,272 bp, which is 327 bp shorter than the common buckwheat cp genome. The cp gene content, order, and orientation are similar to those of common buckwheat, but with some structural variation at tandem and palindromic repeat frequencies and junction areas. A total of seven InDels (around 100 bp) were found within the intergenic sequences and the ycf1 gene. Copy number variation of the 21-bp tandem repeat varied in F. tataricum (four repeats) and F. esculentum (one repeat), and the InDel of the ycf1 gene was 63 bp long. Nucleotide and amino acid have highly conserved coding sequence with about 98% homology and four genes--rpoC2, ycf3, accD, and clpP--have high synonymous (Ks) value. PCR based InDel markers were applied to diverse genetic resources of F. tataricum and F. esculentum, and the amplicon size was identical to that expected in silico. Therefore, these InDel markers are informative biomarkers to practically distinguish raw or processed buckwheat products derived from F. tataricum and F. esculentum.
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