Evidence map›Paper›PMID 25965799›Full record

ArticleVirology2015

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Lemme P Kebaabetswe, Anoria K Haick, Marina A Gritsenko, Thomas L Fillmore, Rosalie K Chu, Samuel O Purvine, Bobbie-Jo Webb-Robertson, Melissa M Matzke, Richard D Smith, Katrina M Waters and 2 more

Open access · greenAbstract read
In one paragraph

Article in Virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Prognostic biomarkers based onTranslational cancer research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Lemme P KebaabetsweDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Anoria K HaickDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA.
Marina A GritsenkoBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Thomas L FillmoreEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Rosalie K ChuEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Samuel O PurvineEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Bobbie-Jo Webb-RobertsonComputational and Statistical Analytics Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Melissa M MatzkeBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Richard D SmithBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Katrina M WatersBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Thomas O MetzBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Tanya A MiuraDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844, USA. Electronic address: tmiura@uidaho.edu.
Pacific Northwest National Laboratory · USUniversity of Idaho · USEnvironmental Molecular Sciences Laboratory · US

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Carolyn Hovde Bohach · 2012 to 2026
$59.8M
The Burden of Chikungunya and Dengue Infection in KenyaU54AI081680 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI BEVAN, MICHAEL J · 2009 to 2013
$40.4M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Genomics Resources Core (GRC)P30GM103324 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2013 to 2017
$5.0M
Center for Research on Processes in EvolutionP20GM103397 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2012 to 2012
$1.9M
NIAID NIH HHS U54 AI081680NIGMS NIH HHS P20 GM103397NIGMS NIH HHS P20 GM103408NIGMS NIH HHS P30 GM103324NIGMS NIH HHS P30GM103324NIGMS NIH HHS P41 GM103493NIGMS NIH HHS P41GM103493
6 · The paper itself

Abstract

Infection of type II alveolar epithelial (ATII) cells by influenza A viruses (IAV) correlates with severe respiratory disease in humans and mice. To understand pathogenic mechanisms during IAV infection of ATII cells, murine ATII cells were cultured to maintain a differentiated phenotype, infected with IAV-PR8, which causes severe lung pathology in mice, and proteomics analyses were performed using liquid chromatography-mass spectrometry. PR8 infection increased levels of proteins involved in interferon signaling, antigen presentation, and cytoskeleton regulation. Proteins involved in mitochondrial membrane permeability, energy metabolism, and chromatin formation had reduced levels in PR8-infected cells. Phenotypic markers of ATII cells in vivo were identified, confirming the differentiation status of the cultures. Surfactant protein B had decreased levels in PR8-infected cells, which was confirmed by immunoblotting and immunofluorescence assays. Analysis of ATII cell protein profiles will elucidate cellular processes in IAV pathogenesis, which may provide insight into potential therapies to modulate disease severity.

Indexed as

Down-RegulationAlveolar Epithelial CellsAnimalsCells, CulturedChromatography, LiquidFluorescent Antibody TechniqueGene Expression ProfilingImmunoblottingInfluenza A virusMass SpectrometryMice, Inbred C57BLProteomicsPulmonary Surfactant-Associated Protein BPulmonary Surfactant-Associated Protein BInfluenza A virusPrimary alveolar type II epithelial cellsQuantitative proteomicsSurfactant protein B

Identifiers

PMID25965799
PMCPMC4516596
OpenAlexW277045137

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.