Evidence map›Paper›PMID 25964630›Full record

ArticleBioinformatics (Oxford, England)2015

PsyGeNET: a knowledge platform on psychiatric disorders and their genes.

Alba Gutiérrez-Sacristán, Solène Grosdidier, Olga Valverde, Marta Torrens, Àlex Bravo, Janet Piñero, Ferran Sanz, Laura I Furlong

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

  1. Molecular Characterization of the Progressive Landscape of Depression.bioRxiv : the preprint server for biology · 2026
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  10. Proceedings of machine learning research · 2024
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  11. Genes · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alba Gutiérrez-SacristánResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Solène GrosdidierResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Olga ValverdeResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Marta TorrensResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Àlex BravoResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Janet PiñeroResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Ferran SanzResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.
Laura I FurlongResearch Group on Integrative Biomedical Informatics, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra (UPF), Neurobiology of Behaviour Research Group (GReNeC), IMIM, DCEXS, UPF and Institute of Neuropsychiatry and Addiction, Parc de Salut Mar, Universitat Autònoma de Barcelona, Barcelona 08003, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledPsyGeNET (Psychiatric disorders and Genes association NETwork) is a knowledge platform for the exploratory analysis of psychiatric diseases and their associated genes. PsyGeNET is composed of a database and a web interface supporting data search, visualization, filtering and sharing. PsyGeNET integrates information from DisGeNET and data extracted from the literature by text mining, which has been curated by domain experts. It currently contains 2642 associations between 1271 genes and 37 psychiatric disease concepts. In its first release, PsyGeNET is focused on three psychiatric disorders: major depression, alcohol and cocaine use disorders. PsyGeNET represents a comprehensive, open access resource for the analysis of the molecular mechanisms underpinning psychiatric disorders and their comorbidities. AVAILABILITY AND IMPLEMENTATION: The PysGeNET platform is freely available at http://www.psygenet.org/. The PsyGeNET database is made available under the Open Database License (http://opendatacommons.org/licenses/odbl/1.0/). CONTACT: lfurlong@imim.es SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Indexed as

Gene Regulatory NetworksKnowledge BasesSoftwareAlcoholismAlgorithmsAnimalsBiomarkersChromosome MappingCocaine-Related DisordersDatabases, FactualData MiningDisease Models, AnimalHumansMajor Depressive DisorderMicePublicationsBiomarkers

Identifiers

PMID25964630
PMCPMC4565028

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.