Evidence map›Paper›PMID 25964331›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Nur A Hasan, Christopher J Grim, Erin K Lipp, Irma N G Rivera, Jongsik Chun, Bradd J Haley, Elisa Taviani, Seon Young Choi, Mozammel Hoq, A Christine Munk and 8 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 75 citations in OpenAlex.

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  16. Mass mortality of the keratose spongeFrontiers in microbiology · 2023
    Article
  17. Article
  18. Fine-Scale Structuring of PlanktonicApplied and environmental microbiology · 2022
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  20. A Global Perspective ofEnvironmental health insights · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 4 countries.

Nur A HasanMaryland Pathogen Research Institute, CosmosID, College Park, MD 20742; University of Maryland Institute for Advanced Computer Studies, and.
Christopher J GrimMaryland Pathogen Research Institute, University of Maryland Institute for Advanced Computer Studies, and.
Erin K LippEnvironmental Health Science, College of Public Health, University of Georgia, Athens, GA 30602;
Irma N G RiveraDepartment of Microbiology, Institute of Biomedical Sciences, University of São Paulo, CEP 05508-900 São Paulo, Brazil;
Jongsik ChunSchool of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul 151-742, Republic of Korea;
Bradd J HaleyMaryland Pathogen Research Institute.
Elisa TavianiMaryland Pathogen Research Institute.
Seon Young ChoiMaryland Pathogen Research Institute, CosmosID, College Park, MD 20742;
Mozammel HoqDepartment of Microbiology, University of Dhaka, Dhaka-1000, Bangladesh;
A Christine MunkGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
Thomas S BrettinGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
David BruceGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
Jean F ChallacombeGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
J Chris DetterGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
Cliff S HanGenome Science Group, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545;
Jonathan A EisenUniversity of California Davis Genome Center, Davis, CA 95616;
Anwar HuqMaryland Pathogen Research Institute, Institute for Applied Environmental Health, University of Maryland, College Park, MD 20742;
Rita R ColwellMaryland Pathogen Research Institute, CosmosID, College Park, MD 20742; University of Maryland Institute for Advanced Computer Studies, and Bloomberg School of Public Health, The Johns Hopkins University, Baltimore, MD 21205 rcolwell@umiacs.umd.edu.
Los Alamos National Laboratory · USMaryland Medical Research Institute · USCosmos Corporation (United States) · USJohns Hopkins University · USResearch Institute for Advanced Computer Science · USSeoul National University · KRUniversidade de São Paulo · BRUniversity of California, Davis · USUniversity of Dhaka · BDUniversity of Georgia · US

Funding

MULTIVALENT AAV VECTORS FOR HIV-1 GENE THERAPYR01AI040001 · NIAID · CITY OF HOPE NATIONAL MEDICAL CENTER · PI CHATTERJEE, SASWATI · 1996 to 1998
–
NIAID NIH HHS N01 AI040001NIAID NIH HHS N01-AI-30001NIAID NIH HHS N01-AI-40001PHS HHS 1R01A139129-01
6 · The paper itself

Abstract

Vibrio species are both ubiquitous and abundant in marine coastal waters, estuaries, ocean sediment, and aquaculture settings worldwide. We report here the isolation, characterization, and genome sequence of a novel Vibrio species, Vibrio antiquarius, isolated from a mesophilic bacterial community associated with hydrothermal vents located along the East Pacific Rise, near the southwest coast of Mexico. Genomic and phenotypic analysis revealed V. antiquarius is closely related to pathogenic Vibrio species, namely Vibrio alginolyticus, Vibrio parahaemolyticus, Vibrio harveyi, and Vibrio vulnificus, but sufficiently divergent to warrant a separate species status. The V. antiquarius genome encodes genes and operons with ecological functions relevant to the environment conditions of the deep sea and also harbors factors known to be involved in human disease caused by freshwater, coastal, and brackish water vibrios. The presence of virulence factors in this deep-sea Vibrio species suggests a far more fundamental role of these factors for their bacterial host. Comparative genomics revealed a variety of genomic events that may have provided an important driving force in V. antiquarius evolution, facilitating response to environmental conditions of the deep sea.

Indexed as

Evolution, MolecularGenome, BacterialHumansHydrothermal VentsPhylogenyRNA, BacterialRNA, Ribosomal, 16SSeawaterSpecies SpecificityVibrioVirulenceRNA, BacterialRNA, Ribosomal, 16SEX25genomicshydrothermal ventVibrio

Identifiers

PMID25964331
PMCPMC4450432
OpenAlexW1817819361

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.