ArticleNucleic acids research2015
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species.
Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 249 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
249 citing papers in PubMed.
- Identification of beneficial bacterial strains for tomato growth promotion and biocontrol of bacterial canker caused byApplied and environmental microbiology · 2026Article
- Acinetobacter guillouiae, a lipolytic strain isolated from sludge capable of partially depolymerising polyethylene terephthalate: genomic, proteomic, and biochemical insights.BMC microbiology · 2026Article
- Whole-genome sequencing reveals hidden antimicrobial resistance genes in phenotypically susceptible probiotic candidate lactic acid bacteria.Scientific reports · 2026Article
- Whole genome sequence analysis supports the genomic mosaicism of the endangered Hawaiian duck (Anas wyvilliana).Scientific reports · 2026Article
- Genome-based reclassification of Chromohalobacter japonicus Sánchez-Porro et al. 2007 as a later heterotypic synonym of Chromohalobacter beijerinckii Peçonek et al. 2006.Antonie van Leeuwenhoek · 2026Article
- Whole-genome sequencing and comparative genomic analysis ofFrontiers in microbiology · 2026Article
- Article
- Genomic and taxonomic characterization of Niallia pakistanensis sp. nov. NCCP-28Antonie van Leeuwenhoek · 2025Article
- Predicting the role of β-GAL genes in bean under abiotic stress and genome-wide characterization of β-GAL gene family members.Protoplasma · 2025Article
- Integrative genomic characterization of five Pediococcus acidilactici strains reveals differing probiotic safety profiles.PloS one · 2025Article
- Genomic configuration ofFrontiers in plant science · 2025Article
- Insights into the dynamics and evolution of Rummeliibacillus stabekisii prophages in extreme environments: from Antarctic soil to spacecraft floors.Extremophiles : life under extreme conditions · 2024Article
- Genomic characterisation of an extended-spectrum β-Lactamase-producing Klebsiella pneumoniae isolate assigned to a novel sequence type (6914).Gut pathogens · 2024Article
- A highly contiguous genome sequence of Alternaria porri isolate Apn-Nashik causing purple blotch disease in onion.BMC genomic data · 2024Article
- Functional genomics and taxonomic insights into heavy metal tolerant novel bacterium Brevibacterium metallidurans sp. nov. NCCP-602Antonie van Leeuwenhoek · 2024Article
- Genotypic and Phenotypic Characterization ofMicroorganisms · 2024Article
- Genomics and taxonomy of the glyphosate-degrading, copper-tolerant rhizospheric bacterium Achromobacter insolitus LCu2.Antonie van Leeuwenhoek · 2024Article
- Deciphering the possible role of RNA-helicase genes mechanism in response to abiotic stresses in rapeseed (Brassica napus L.).BMC plant biology · 2024Article
- A Small Genome amidst the Giants: Evidence of Genome Reduction in a Small Tubulinid Free-Living Amoeba.Genome biology and evolution · 2024Article
- Metagenomic exploration of Andaman region of the Indian Ocean.Scientific reports · 2024Article
189 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genome wide analysis of orthologous clusters is an important component of comparative genomics studies. Identifying the overlap among orthologous clusters can enable us to elucidate the function and evolution of proteins across multiple species. Here, we report a web platform named OrthoVenn that is useful for genome wide comparisons and visualization of orthologous clusters. OrthoVenn provides coverage of vertebrates, metazoa, protists, fungi, plants and bacteria for the comparison of orthologous clusters and also supports uploading of customized protein sequences from user-defined species. An interactive Venn diagram, summary counts, and functional summaries of the disjunction and intersection of clusters shared between species are displayed as part of the OrthoVenn result. OrthoVenn also includes in-depth views of the clusters using various sequence analysis tools. Furthermore, OrthoVenn identifies orthologous clusters of single copy genes and allows for a customized search of clusters of specific genes through key words or BLAST. OrthoVenn is an efficient and user-friendly web server freely accessible at http://probes.pw.usda.gov/OrthoVenn or http://aegilops.wheat.ucdavis.edu/OrthoVenn.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.