Evidence map›Paper›PMID 25963861›Full record

ArticleMolecular genetics and metabolism2015

Gene expression in cell lines from propionic acidemia patients, carrier parents, and controls.

Kimberly A Chapman, William S Bush, Zhe Zhang

Abstract read
In one paragraph

Article in Molecular genetics and metabolism, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Kimberly A ChapmanGenetics and Metabolism, Children's National Health System, Washington DC 20010, United States; Center for Genetic Medicine, George Washington University, Washington DC 20010, United States. Electronic address: kchapman@childrensnational.org.
William S BushVanderbilt University, Nashville, TN, United States. Electronic address: william.s.bush@Vanderbilt.Edu.
Zhe ZhangCenter for Biomedical Informatics, The Children's Hospital of Philadelphia, Philadelphia, PA, United States. Electronic address: Zhangz@email.chop.edu.
Children's Hospital of Philadelphia · USGeorge Washington University · USVanderbilt University · US

Funding

TRANSGENIC MOUSE MODELS OF MENTAL RETARDATIONP30HD026979 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI COULTER, DOUGLAS A · 1990 to 2015
$15.3M
Child Health Research Career Development Award (CHRCDA) Program at Children's NationalK12HD001399 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI NATHAN KUPPERMANN · 2001 to 2026
$9.1M
MEDICAL GENETICS RESEARCH TRAINING GRANTT32GM008638 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca Ganetzky · 1997 to 2026
$8.7M
NICHD NIH HHS 05K12-HD001399-12NICHD NIH HHS K12 HD001399NICHD NIH HHS P30 HD026979NIGMS NIH HHS 5-T32-GM-008638-11NIGMS NIH HHS T32 GM008638
6 · The paper itself

Abstract

Propionic acidemia (PA) is an inborn of metabolism which usually presents with metabolic acidosis and accumulation of 3-hydroxypropionate among other toxins. Examining the gene expression in lymphoblastoid cell lines (LCLs) from PA patients, their carrier parents and age/sex-matched controls at normal glucose and low glucose growth conditions demonstrated differences among and between these groups. Using three-way ANOVA analysis, four DAVID clusters of response were identified of which three of the four clusters showed that LCLs from carrier parents had an intermediate response between healthy controls and PA patients. These differences included changes in expression of cell cycle regulatory genes, mitochondrial related genes, and transcriptional regulation. In addition, differences also were observed in expression of genes involved in transendothelial migration and focal adhesion at normal growth conditions when comparing the LCLs from PA patients and controls. These studies demonstrate transcriptional differences between LCLs from PA patients, their parents and biochemically normal controls.

Indexed as

Gene ExpressionCell Line, TumorFemaleGlucoseHumansMaleParentsPropionic AcidemiaGlucoseGene expressionGene transcriptionOrganic acidemiaPropionic acidemiaPropionic aciduria

Identifiers

PMID25963861
PMCPMC4522369
OpenAlexW288754587

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.