Evidence map›Paper›PMID 25963709›Full record

ArticleBrain structure & function2016

Molecular anatomy of the thalamic complex and the underlying transcription factors.

Andrzej Nagalski, Luis Puelles, Michal Dabrowski, Tomasz Wegierski, Jacek Kuznicki, Marta B Wisniewska

Open access · hybridAbstract read
In one paragraph

Article in Brain structure & function, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 75 citations in OpenAlex.

  1. Transcriptomic Analysis of the Human Habenula in Schizophrenia.The American journal of psychiatry · 2025
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  6. Perinatal development of structural thalamocortical connectivity.Imaging neuroscience (Cambridge, Mass.) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Andrzej NagalskiLaboratory of Neurodegeneration, International Institute of Molecular and Cell Biology, Warsaw, 02-109, Poland.
Luis PuellesDepartment of Human Anatomy, University of Murcia and IMIB, Murcia, 30071, Spain.
Michal DabrowskiLaboratory of Bioinformatics, Center of Neurobiology, Nencki Institute of Experimental Biology, Warsaw, 02-093, Poland.
Tomasz WegierskiLaboratory of Neurodegeneration, International Institute of Molecular and Cell Biology, Warsaw, 02-109, Poland.
Jacek KuznickiLaboratory of Neurodegeneration, International Institute of Molecular and Cell Biology, Warsaw, 02-109, Poland.
Marta B WisniewskaLaboratory of Neurodegeneration, International Institute of Molecular and Cell Biology, Warsaw, 02-109, Poland. m.wisniewska@cent.uw.edu.pl.ORCID 0000-0002-1593-0361
International Institute of Molecular and Cell Biology · PLInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PLUniversidad de Murcia · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thalamocortical loops have been implicated in the control of higher-order cognitive functions, but advances in our understanding of the molecular underpinnings of neocortical organization have not been accompanied by similar analyses in the thalamus. Using expression-based correlation maps and the manual mapping of mouse and human datasets available in the Allen Brain Atlas, we identified a few individual regions and several sets of molecularly related nuclei that partially overlap with the classic grouping that is based on topographical localization and thalamocortical connections. These new molecular divisions of the adult thalamic complex are defined by the combinatorial expression of Tcf7l2, Lef1, Gbx2, Prox1, Pou4f1, Esrrg, and Six3 transcription factor genes. Further in silico and experimental analyses provided the evidence that TCF7L2 might be a pan-thalamic specifier. These results provide substantial insights into the "molecular logic" that underlies organization of the thalamic complex.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAtlases as TopicDatabases, ChemicalEye ProteinsGene ExpressionHomeobox Protein SIX3Homeodomain ProteinsHumansLymphoid Enhancer-Binding Factor 1MiceNerve Tissue ProteinsProspero-Related Homeobox 1 ProteinReceptors, EstrogenThalamic NucleiTranscription Factor 7-Like 2 ProteinESRRG protein, humanEye ProteinsGBX2 protein, humanHomeobox Protein SIX3Homeodomain ProteinsLEF1 protein, humanLymphoid Enhancer-Binding Factor 1Nerve Tissue ProteinsPOU4F1 protein, humanProspero-Related Homeobox 1 ProteinReceptors, EstrogenTCF7L2 protein, humanTranscription Factor 7-Like 2 ProteinTranscription Factor Brn-3ATranscription FactorsTumor Suppressor ProteinsBrain anatomyGenoarchitectureTCF7L2ThalamusTranscription factors

Identifiers

PMID25963709
PMCPMC4884203
OpenAlexW304416513

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.