Evidence map›Paper›PMID 25962980›Full record

ArticleBiochemistry2015

Chemical Interactions of Polyethylene Glycols (PEGs) and Glycerol with Protein Functional Groups: Applications to Effects of PEG and Glycerol on Protein Processes.

D B Knowles, Irina A Shkel, Noel M Phan, Matt Sternke, Emily Lingeman, Xian Cheng, Lixue Cheng, Kevin O'Connor, M Thomas Record

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
  2. Residue-level mapping of crowding effects on protein phase separation.Protein science : a publication of the Protein Society · 2026
    Article
  3. Article
  4. Article
  5. Crowding beyond excluded volume: A tale of two dimers.Protein science : a publication of the Protein Society · 2025
    Article
  6. PEG-mCherry interactions beyond classical macromolecular crowding.Protein science : a publication of the Protein Society · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Diffusiophoresis in Polymer and Nanoparticle Gradients.The journal of physical chemistry. B · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Hydration-mediated G-protein-coupled receptor activation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

D B Knowles†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Irina A Shkel†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Noel M Phan†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Matt Sternke†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Emily Lingeman†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Xian Cheng†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Lixue Cheng†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
Kevin O'Connor†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
M Thomas Record†Department of Biochemistry, ‡Department of Chemistry, and §Program in Biophysics, University of Wisconsin-Madison, 433 Babcock Drive, Madison, Wisconsin 53706, United States.
University of Wisconsin–Madison · US

Funding

THERMODYNAMIC AND NMR STUDIES ON THE E COLI CYTOPLASMR01GM047022 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RECORD, M. THOMAS · 1992 to 2015
$4.1M
NIGMS NIH HHS R01 GM047022
6 · The paper itself

Abstract

In this work, we obtain the data needed to predict chemical interactions of polyethylene glycols (PEGs) and glycerol with proteins and related organic compounds and thereby interpret or predict chemical effects of PEGs on protein processes. To accomplish this, we determine interactions of glycerol and tetraEG with >30 model compounds displaying the major C, N, and O functional groups of proteins. Analysis of these data yields coefficients (α values) that quantify interactions of glycerol, tetraEG, and PEG end (-CH2OH) and interior (-CH2OCH2-) groups with these groups, relative to interactions with water. TetraEG (strongly) and glycerol (weakly) interact favorably with aromatic C, amide N, and cationic N, but unfavorably with amide O, carboxylate O, and salt ions. Strongly unfavorable O and salt anion interactions help make both small and large PEGs effective protein precipitants. Interactions of tetraEG and PEG interior groups with aliphatic C are quite favorable, while interactions of glycerol and PEG end groups with aliphatic C are not. Hence, tetraEG and PEG300 favor unfolding of the DNA-binding domain of lac repressor (lacDBD), while glycerol and di- and monoethylene glycol are stabilizers. Favorable interactions with aromatic and aliphatic C explain why PEG400 greatly increases the solubility of aromatic hydrocarbons and steroids. PEG400-steroid interactions are unusually favorable, presumably because of simultaneous interactions of multiple PEG interior groups with the fused ring system of the steroid. Using α values reported here, chemical contributions to PEG m-values can be predicted or interpreted in terms of changes in water-accessible surface area (ΔASA) and separated from excluded volume effects.

Indexed as

Models, ChemicalEscherichia coli ProteinsGlycerolLac RepressorsPolyethylene GlycolsEscherichia coli ProteinsGlycerolLacI protein, E coliLac RepressorsPolyethylene Glycols

Identifiers

PMID25962980
PMCPMC4464906
OpenAlexW263380825

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.