Evidence map›Paper›PMID 25962588›Full record

ArticleBMC genomics2015

Differences in brain gene transcription profiles advocate for an important role of cognitive function in upstream migration and water obstacles crossing in European eel.

Tomasz Podgorniak, Massimo Milan, Jose Marti Pujolar, Gregory E Maes, Luca Bargelloni, Eric De Oliveira, Fabien Pierron, Francoise Daverat

Abstract readComparative Study
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tomasz PodgorniakIrstea Bordeaux, UR EABX, HYNES (Irstea - EDF R&D), 50 avenue de Verdun, Cestas, 33612, Cedex, France. tomasz.podgorniak@irstea.fr.
Massimo MilanUniversity of Padova, Viale dell'Università 16, Legnaro, 35020, PD, Italy. massimo.milan@unipd.it.
Jose Marti PujolarUniversity of Padova, Viale dell'Università 16, Legnaro, 35020, PD, Italy. martipujolar@gmail.com.
Gregory E MaesCentre for Sustainable Tropical Fisheries and Aquaculture, Comparative Genomics Centre, College of Marine and Environmental Sciences, James Cook University, Townsville, Qld 4811, Australia. Gregory.Maes@bio.kuleuven.be.
Luca BargelloniUniversity of Padova, Viale dell'Università 16, Legnaro, 35020, PD, Italy. luca.bargelloni@unipd.it.
Eric De OliveiraEDF R&D LNHE, HYNES (Irstea-EDF R&D), 6, quai Watier, Bat Q, Chatou, 78400, France. eric.de-oliveira@edf.fr.
Fabien PierronUniv. Bordeaux, EPOC, UMR 5805, Talence, F-33400, France. f.pierron@epoc.u-bordeaux1.fr.
Francoise DaveratIrstea Bordeaux, UR EABX, HYNES (Irstea - EDF R&D), 50 avenue de Verdun, Cestas, 33612, Cedex, France. francoise.daverat@irstea.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEuropean eel is a panmictic species, whose decline has been recorded since the last 20 years. Among human-induced environmental factors of decline, the impact of water dams during species migration is questioned. The main issue of this study was to pinpoint phenotypic traits that predisposed glass eels to successful passage by water barriers. The approach of the study was individual-centred and without any a priori hypothesis on traits involved in the putative obstacles selective pressure. We analyzed the transcription level of 14,913 genes.

resultsTranscriptome analysis of three tissues (brain, liver and muscle) from individuals sampled on three successive forebays separated by water obstacles indicated different gene transcription profiles in brain between the two upstream forebays. No differences in gene transcription levels were observed in liver and muscle samples among segments. A total of 26 genes were differentially transcribed in brain. These genes encode for, among others, keratins, cytokeratins, calcium binding proteins (S100 family), cofilin, calmodulin, claudin and thy-1 membrane glycoprotein. The functional analysis of these genes highlighted a putative role of cytoskeletal dynamics and synaptic plasticity in fish upstream migration.

conclusionSynaptic connections in brain are solicited while eels are climbing the obstacles with poorly designed fishways. Successful passage by such barriers can be related to spatial learning and spatial orientation abilities when fish is out of the water.

Indexed as

Animal MigrationCognitionGene Expression ProfilingTranscription, GeneticWaterAnguillaAnimalsBrainOligonucleotide Array Sequence AnalysisOrgan SpecificityWater

Identifiers

PMID25962588
PMCPMC4427925

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.