Evidence map›Paper›PMID 25962149›Full record

ArticlePloS one2015

Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer.

Oksana V Arkhipova, Margarita V Meer, Galina V Mikoulinskaia, Marina V Zakharova, Alexander S Galushko, Vasilii K Akimenko, Fyodor A Kondrashov

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Oksana V ArkhipovaScryabin's Institute of Biochemistry and Physiology of Microorganisms, Pushchino 142290, Russia.
Margarita V MeerBioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) 88 Dr. Aiguader, 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain.
Galina V MikoulinskaiaBranch of Shemyakin & Ovchinnikov's Institute of Bioorganic Chemistry, Pushchino 142290, Russia.
Marina V ZakharovaScryabin's Institute of Biochemistry and Physiology of Microorganisms, Pushchino 142290, Russia.
Alexander S GalushkoAgrophysical Research Institute RAS, Saint-Petersburg 195220, Russia; Tomsk State University, Tomsk, 634050, Russia.
Vasilii K AkimenkoScryabin's Institute of Biochemistry and Physiology of Microorganisms, Pushchino 142290, Russia.
Fyodor A KondrashovBioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG) 88 Dr. Aiguader, 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), 23 Pg. Lluís Companys, 08010 Barcelona, Spain.
G. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms · RUCentre for Genomic Regulation · ESInstitució Catalana de Recerca i Estudis Avançats · ESInstitute of Bioorganic Chemistry · RUNational Research Tomsk State University · RU

Funding

Howard Hughes Medical Institute 55007424
6 · The paper itself

Abstract

The origin and evolution of novel biochemical functions remains one of the key questions in molecular evolution. We study recently emerged methacrylate reductase function that is thought to have emerged in the last century and reported in Geobacter sulfurreducens strain AM-1. We report the sequence and study the evolution of the operon coding for the flavin-containing methacrylate reductase (Mrd) and tetraheme cytochrome с (Mcc) in the genome of G. sulfurreducens AM-1. Different types of signal peptides in functionally interlinked proteins Mrd and Mcc suggest a possible complex mechanism of biogenesis for chromoproteids of the methacrylate redox system. The homologs of the Mrd and Mcc sequence found in δ-Proteobacteria and Deferribacteres are also organized into an operon and their phylogenetic distribution suggested that these two genes tend to be horizontally transferred together. Specifically, the mrd and mcc genes from G. sulfurreducens AM-1 are not monophyletic with any of the homologs found in other Geobacter genomes. The acquisition of methacrylate reductase function by G. sulfurreducens AM-1 appears linked to a horizontal gene transfer event. However, the new function of the products of mrd and mcc may have evolved either prior or subsequent to their acquisition by G. sulfurreducens AM-1.

Indexed as

Gene Transfer, HorizontalOxidation-ReductionBacterial ProteinsBiological EvolutionGene OrderGenome, BacterialGeobacterMethacrylatesMolecular Sequence DataOperonPhylogenyBacterial ProteinsMethacrylates

Identifiers

PMID25962149
PMCPMC4427408
OpenAlexW2116880189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.