Evidence map›Paper›PMID 25962138›Full record

ArticlePloS one2015

Quantification of histone deacetylase isoforms in human frontal cortex, human retina, and mouse brain.

Kyle W Anderson, Junjun Chen, Meiyao Wang, Natalia Mast, Irina A Pikuleva, Illarion V Turko

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 72 citations in OpenAlex.

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  11. Novel therapeutic approaches to target neurodegeneration.British journal of pharmacology · 2023
    Review
  12. Review
  13. Salivary Exosomes in Health and Disease: Future Prospects in the Eye.International journal of molecular sciences · 2023
    Review
  14. Article
  15. Article
  16. [Nature communications · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Clinical validation of the novel HDAC6 radiotracer [European journal of nuclear medicine and molecular imaging · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Kyle W AndersonInstitute for Bioscience and Biotechnology Research, Rockville, Maryland, United States of America; Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America; Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, United States of America.
Junjun ChenInstitute for Bioscience and Biotechnology Research, Rockville, Maryland, United States of America; Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Meiyao WangInstitute for Bioscience and Biotechnology Research, Rockville, Maryland, United States of America; Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Natalia MastDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio, United States of America.
Irina A PikulevaDepartment of Ophthalmology and Visual Sciences, Case Western Reserve University, Cleveland, Ohio, United States of America.
Illarion V TurkoInstitute for Bioscience and Biotechnology Research, Rockville, Maryland, United States of America; Biomolecular Measurement Division, National Institute of Standards and Technology, Gaithersburg, Maryland, United States of America.
Case Western Reserve University · USMaterial Measurement Laboratory · USInstitute for Bioscience and Biotechnology ResearchNational Institute of Standards and Technology · US

Funding

WASHINGTON UNIVERSITY ALZHEIMERS DISEASE RESEARCH CENTERP50AG005681 · NIA · WASHINGTON UNIVERSITY · PI MORRIS, JOHN · 1985 to 2019
$52.1M
TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI CARLOS S SUBAUSTE · 1997 to 2026
$17.7M
Significance of CYP46A1 and other P450s in retinal functionR01EY018383 · NEI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI PIKULEVA, IRINA A · 2007 to 2024
$6.8M
Structure and function of cholesterol metabolizing P450sR01GM062882 · NIGMS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PIKULEVA, IRINA A · 2001 to 2019
$5.5M
NEI NIH HHS EY011373NEI NIH HHS EY018383NEI NIH HHS P30 EY011373NEI NIH HHS R01 EY018383NIA NIH HHS P50 AG005681NIGMS NIH HHS GM062882NIGMS NIH HHS R01 GM062882
6 · The paper itself

Abstract

Histone deacetylase (HDAC) inhibition has promise as a therapy for Alzheimer's disease (AD) and other neurodegenerative diseases. Currently, therapeutic HDAC inhibitors target many HDAC isoforms, a particularly detrimental approach when HDAC isoforms are known to have different and specialized functions. We have developed a multiple reaction monitoring (MRM) mass spectrometry assay using stable isotope-labeled QconCATs as internal standards to quantify HDAC isoforms. We further determined a quantitative pattern of specific HDACs expressed in various human and mouse neural tissues. In human AD frontal cortex, HDAC1,2 decreased 32%, HDAC5 increased 47%, and HDAC6 increased 31% in comparison to age-matched controls. Human neural retina concentrations of HDAC1, 2, HDAC5, HDAC6, and HDAC7 decreased in age-related macular degeneration (AMD)-affected donors and exhibited a greater decrease in AD-affected donors in comparison to age-matched control neural retinas. Additionally, HDAC concentrations were measured in whole hemisphere of brain of 5XFAD mice, a model of β-amyloid deposition, to assess similarity to AD in human frontal cortex. HDAC profiles of human frontal cortex and mouse hemisphere had noticeable differences and relatively high concentrations of HDAC3 and HDAC4 in mice, which were undetectable in humans. Our method for quantification of HDAC isoforms is a practical and efficient technique to quantify isoforms in various tissues and diseases. Changes in HDAC concentrations reported herein contribute to the understanding of the pathology of neurodegeneration.

Indexed as

AnimalsBrainChromatography, LiquidFemaleFrontal LobeHistone DeacetylasesHumansIsoenzymesMaleMiceRetinaTandem Mass SpectrometryHistone DeacetylasesIsoenzymes

Identifiers

PMID25962138
PMCPMC4427357
OpenAlexW2179472466

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.