Evidence map›Paper›PMID 25960405›Full record

ArticleStructure (London, England : 1993)2015

Conformational Changes Underlying Desensitization of the Pentameric Ligand-Gated Ion Channel ELIC.

Monica N Kinde, Qiang Chen, Matthew J Lawless, David D Mowrey, Jiawei Xu, Sunil Saxena, Yan Xu, Pei Tang

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. ACS chemical biology · 2019
    Article
  10. Article
  11. Review
  12. Crystal structures of a pentameric ion channel gated by alkaline pH show a widely open pore and identify a cavity for modulation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Monica N KindeDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Qiang ChenDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Matthew J LawlessDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.
David D MowreyDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Jiawei XuDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Sunil SaxenaDepartment of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Yan XuDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA.
Pei TangDepartment of Anesthesiology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Pharmacology & Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA; Department of Computational & Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA. Electronic address: tangp@anes.upmc.edu.

Funding

NMR STUDIES OF MECHANISMS OF GENERAL ANESTHESIAR37GM049202 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI XU, YAN · 2004 to 2013
$4.9M
Research Training in Anesthesiology and Pain MedicineT32GM075770 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YAN XU · 2007 to 2026
$4.8M
ANESTHETIC SITES IN TRANSMEMBRANE PEPTIDES BY NMRR01GM056257 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TANG, PEI · 1998 to 2017
$4.8M
ANESTHETIC EFFECTS ON ION CHANNEL STRUCTURES & DYNAMICSR01GM066358 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TANG, PEI · 2002 to 2014
$3.6M
NMR STUDIES OF MECHANISMS OF GENERAL ANESTHESIAR01GM049202 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI XU, YAN · 2000 to 2018
$3.3M
Acquisition of a High Frequency Pulsed Electron Spin Resonance SpectrometerS10RR028701 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SAXENA, SUNIL K · 2011 to 2011
$1.6M
NCRR NIH HHS 1S10RR028701NCRR NIH HHS S10 RR028701NIGMS NIH HHS R01 GM049202NIGMS NIH HHS R01 GM056257NIGMS NIH HHS R01GM056257NIGMS NIH HHS R01 GM066358NIGMS NIH HHS R01GM066358NIGMS NIH HHS R37 GM049202NIGMS NIH HHS R37GM049202NIGMS NIH HHS T32 GM075770NIGMS NIH HHS T32GM075770
6 · The paper itself

Abstract

Structural rearrangements underlying functional transitions of pentameric ligand-gated ion channels (pLGICs) are not fully understood. Using (19)F nuclear magnetic resonance and electron spin resonance spectroscopy, we found that ELIC, a pLGIC from Erwinia chrysanthemi, expanded the extracellular end and contracted the intracellular end of its pore during transition from the resting to an apparent desensitized state. Importantly, the contraction at the intracellular end of the pore likely forms a gate to restrict ion transport in the desensitized state. This gate differs from the hydrophobic gate present in the resting state. Conformational changes of the TM2-TM3 loop were limited to the N-terminal end. The TM4 helices and the TM3-TM4 loop appeared relatively insensitive to agonist-mediated structural rearrangement. These results indicate that conformational changes accompanying functional transitions are not uniform among different ELIC regions. This work also revealed the co-existence of multiple conformations for a given state and suggested asymmetric conformational arrangements in a homomeric pLGIC.

Indexed as

Models, MolecularDickeya chrysanthemiElectron Spin Resonance SpectroscopyLigand-Gated Ion ChannelsMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularProtein ConformationLigand-Gated Ion Channels

Identifiers

PMID25960405
PMCPMC4456284

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.