Evidence map›Paper›PMID 25959823›Full record

ArticleCell reports2015

Apoptosis Triggers Specific, Rapid, and Global mRNA Decay with 3' Uridylated Intermediates Degraded by DIS3L2.

Marshall P Thomas, Xing Liu, Jennifer Whangbo, Geoffrey McCrossan, Keri B Sanborn, Emre Basar, Michael Walch, Judy Lieberman

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 159 citations in OpenAlex.

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  19. A shape-shifting nuclease unravels structured RNA.Nature structural & molecular biology · 2023
    Article
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Marshall P ThomasProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Xing LiuProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Jennifer WhangboProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Geoffrey McCrossanProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Keri B SanbornProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Emre BasarProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Michael WalchProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.
Judy LiebermanProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA. Electronic address: judy.lieberman@childrens.harvard.edu.
Boston Children's Hospital · US

Funding

Granzyme a Pathway of CTL-Mediated Cell DeathR01AI045587 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI LIEBERMAN, JUDY · 1999 to 2008
$4.4M
Granzyme A Pathway of CTL-Mediated Cell DeathR56AI045587 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI LIEBERMAN, JUDY · 2010 to 2010
$525k
NIAID NIH HHS AI045587NIAID NIH HHS R01 AI045587NIAID NIH HHS R56 AI045587
6 · The paper itself

Abstract

Apoptosis is a tightly coordinated cell death program that damages mitochondria, DNA, proteins, and membrane lipids. Little is known about the fate of RNA as cells die. Here, we show that mRNAs, but not noncoding RNAs, are rapidly and globally degraded during apoptosis. mRNA decay is triggered early in apoptosis, preceding membrane lipid scrambling, genomic DNA fragmentation, and apoptotic changes to translation initiation factors. mRNA decay depends on mitochondrial outer membrane permeabilization and is amplified by caspase activation. 3' truncated mRNA decay intermediates with nontemplated uridylate-rich tails are generated during apoptosis. These tails are added by the terminal uridylyl transferases (TUTases) ZCCHC6 and ZCCHC11, and the uridylated transcript intermediates are degraded by the 3' to 5' exonuclease DIS3L2. Knockdown of DIS3L2 or the TUTases inhibits apoptotic mRNA decay, translation arrest, and cell death, whereas DIS3L2 overexpression enhances cell death. Our results suggest that global mRNA decay is an overlooked hallmark of apoptosis.

Indexed as

ApoptosisCell LineDNA-Binding ProteinsExoribonucleasesHumansIn Situ Hybridization, FluorescencePolymerase Chain ReactionRNA, MessengerRNA NucleotidyltransferasesRNA StabilityDIS3L2 protein, humanDNA-Binding ProteinsExoribonucleasesRNA, MessengerRNA NucleotidyltransferasesTUT4 protein, humanTUT7 protein, human

Identifiers

PMID25959823
PMCPMC4862650
OpenAlexW2153588260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.