Evidence map›Paper›PMID 25959393›Full record

ArticleMolecular cell2015

The Histone Chaperones FACT and Spt6 Restrict H2A.Z from Intragenic Locations.

Célia Jeronimo, Shinya Watanabe, Craig D Kaplan, Craig L Peterson, François Robert

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 128 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. IMPACTS OF DNA METHYLATION ON H2A.Z DEPOSITION AND NUCLEOSOME STABILITY.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Beyond Chaperoning: The Multifaceted Role of FACT in Chromatin Transactions.International journal of molecular sciences · 2025
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Célia JeronimoInstitut de recherches cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, QC H2W 1R7, Canada.
Shinya WatanabeProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, 373 Plantation Street, Worcester, MA 01605, USA.
Craig D KaplanDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Craig L PetersonProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, 373 Plantation Street, Worcester, MA 01605, USA.
François RobertInstitut de recherches cliniques de Montréal, 110 Avenue des Pins Ouest, Montréal, QC H2W 1R7, Canada; Département de Médecine, Faculté de Médecine, Université de Montréal, 2900 Boulevard Edouard-Montpetit, Montréal, QC H3T 1J4, Canada. Electronic address: francois.robert@ircm.qc.ca.
University of Massachusetts Chan Medical School · USMontreal Clinical Research Institute · CATexas A&M University · USUniversité de Montréal · CA

Funding

Analysis of the yeast SWI1, SWI2, and SWI3 proteinsR37GM049650 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI PETERSON, CRAIG L · 2006 to 2015
$4.9M
Mechanism and Regulation of RNA Polymerase II ElongationR01GM097260 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAPLAN, CRAIG · 2011 to 2020
$3.3M
YEAST SWI1, SWI2, AND SWI3 PROTEINSR01GM049650 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI PETERSON, CRAIG L · 1993 to 2016
$2.6M
Canadian Institutes of Health Research MOP-191732Canadian Institutes of Health Research MOP-82891NIGMS NIH HHS 5R37GM049650-22NIGMS NIH HHS R01 GM049650NIGMS NIH HHS R01 GM097260NIGMS NIH HHS R01GM097260NIGMS NIH HHS R37 GM049650
6 · The paper itself

Abstract

H2A.Z is a highly conserved histone variant involved in several key nuclear processes. It is incorporated into promoters by SWR-C-related chromatin remodeling complexes, but whether it is also actively excluded from non-promoter regions is not clear. Here we provide genomic and biochemical evidence that the RNA polymerase II (RNA Pol II) elongation-associated histone chaperones FACT and Spt6 both contribute to restricting H2A.Z from intragenic regions. In the absence of FACT or Spt6, the lack of efficient nucleosome reassembly coupled to pervasive incorporation of H2A.Z by mislocalized SWR-C alters chromatin composition and contributes to cryptic initiation. Therefore, chaperone-mediated H2A.Z confinement is crucial for restricting the chromatin signature of gene promoters that otherwise may license or promote cryptic transcription.

Indexed as

Blotting, WesternChromatinGene Expression Regulation, FungalHistone ChaperonesHistonesModels, GeneticMutationNuclear ProteinsNucleosomesPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional Elongation FactorsTranscription FactorsChromatinHistone ChaperonesHistonesHtz1 protein, S cerevisiaeNuclear ProteinsNucleosomesPOB3 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae ProteinsSPT16 protein, S cerevisiaeSPT6 protein, S cerevisiaeTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID25959393
PMCPMC4475440
OpenAlexW1547834895

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.