Evidence map›Paper›PMID 25959296›Full record

ArticleScientific reports2015

Identification of differentially expressed genes related to aphid resistance in cucumber (Cucumis sativus L.).

Danna Liang, Min Liu, Qijing Hu, Min He, Xiaohua Qi, Qiang Xu, Fucai Zhou, Xuehao Chen

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Defensive Resistance of CowpeaPlants (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Article
  7. Transcriptome Profiling of Cucumber (International journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Danna LiangSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Min LiuSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Qijing HuSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Min HeSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Xiaohua QiSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Qiang XuSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Fucai ZhouSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.
Xuehao ChenSchool of Horticulture and Plant Protection, Yangzhou University, Yangzhou, Jiangsu 225009, P.R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cucumber, a very important vegetable crop worldwide, is easily damaged by pests. Aphids (Aphis gossypii Glover) are among the most serious pests in cucumber production and often cause severe loss of yield and make fruit quality get worse. Identifying genes that render cucumbers resistant to aphid-induced damage and breeding aphid-resistant cucumber varieties have become the most promising control strategies. In this study, a Illumina Genome Analyzer platform was applied to monitor changes in gene expression in the whole genome of the cucumber cultivar 'EP6392' which is resistant to aphids. Nine DGE libraries were constructed from infected and uninfected leaves. In total, 49 differentially expressed genes related to cucumber aphid resistance were screened during the treatment period. These genes are mainly associated with signal transduction, plant-pathogen interactions, flavonoid biosynthesis, amino acid metabolism and sugar metabolism pathways. Eight of the 49 genes may be associated with aphid resistance. Finally, expression of 9 randomly selected genes was evaluated by qRT-PCR to verify the results for the tag-mapped genes. With the exception of 1-aminocyclopropane-1-carboxylate oxidase homolog 6, the expression of the chosen genes was in agreement with the results of the tag-sequencing analysis patterns.

Indexed as

AphidsGene Expression Regulation, PlantLice InfestationsAnimalsChromosome MappingCucumis sativusDisease ResistanceGenes, Plant

Identifiers

PMID25959296
PMCPMC4429468

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.