Evidence map›Paper›PMID 25958991›Full record

ArticleNature communications2015

Cells change their sensitivity to an EGF morphogen gradient to control EGF-induced gene expression.

Jeroen Sebastiaan van Zon, Simone Kienle, Guizela Huelsz-Prince, Michalis Barkoulas, Alexander van Oudenaarden

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Eph-ephrin signaling modulated by polymerization and condensation of receptors.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Jeroen Sebastiaan van Zon1] Departments of Physics and Biology and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] FOM Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands.
Simone KienleFOM Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands.
Guizela Huelsz-PrinceFOM Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands.
Michalis Barkoulas1] Institut de Biologie de l'Ecole Normale Supérieure, CNRS-Inserm-ENS, 46 rue d'Ulm, 75230 Paris cedex 05, France [2] Department of Life Sciences, Imperial College London, London SW7 2AZ, UK.
Alexander van Oudenaarden1] Departments of Physics and Biology and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA [2] Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Center Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.
Institute for Atomic and Molecular Physics · NLInserm · FRMassachusetts Institute of Technology · USUniversity Medical Center Utrecht · NL

Funding

TRANS-NETWORK PROJECTSU54CA143874 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CHAKRABORTY, ARUP K. · 2009 to 2013
$15.1M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Stochastic gene expression in differentiation and developmentDP1CA174420 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VAN OUDENAARDEN, ALEXANDER · 2012 to 2012
$832k
European Research Council 294325NCI NIH HHS 8 DP1 CA174420-05NCI NIH HHS DP1 CA174420NCI NIH HHS U54 CA143874NCI NIH HHS U54CA143874NIH HHS P40 OD010440
6 · The paper itself

Abstract

How cells in developing organisms interpret the quantitative information contained in morphogen gradients is an open question. Here we address this question using a novel integrative approach that combines quantitative measurements of morphogen-induced gene expression at single-mRNA resolution with mathematical modelling of the induction process. We focus on the induction of Notch ligands by the LIN-3/EGF morphogen gradient during vulva induction in Caenorhabditis elegans. We show that LIN-3/EGF-induced Notch ligand expression is highly dynamic, exhibiting an abrupt transition from low to high expression. Similar transitions in Notch ligand expression are observed in two highly divergent wild C. elegans isolates. Mathematical modelling and experiments show that this transition is driven by a dynamic increase in the sensitivity of the induced cells to external LIN-3/EGF. Furthermore, this increase in sensitivity is independent of the presence of LIN-3/EGF. Our integrative approach might be useful to study induction by morphogen gradients in other systems.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsEpidermal Growth FactorErbB ReceptorsGene Expression RegulationHumansReceptors, NotchRNA InterferenceTranscriptomeCaenorhabditis elegans ProteinsEpidermal Growth FactorErbB ReceptorsReceptors, Notch

Identifiers

PMID25958991
PMCPMC4438782
OpenAlexW1997972367

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.