Evidence map›Paper›PMID 25957566›Full record

ArticleGlycoconjugate journal2015

Cellular metabolism of unnatural sialic acid precursors.

Nam D Pham, Charles S Fermaintt, Andrea C Rodriguez, Janet E McCombs, Nicole Nischan, Jennifer J Kohler

Open access · greenAbstract read
In one paragraph

Article in Glycoconjugate journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Cell Surface Engineering Tools for Programming Living Assemblies.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Chemical reporters to study mammalian O-glycosylation.Biochemical Society transactions · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Effects of altered sialic acid biosynthesis onThe Journal of biological chemistry · 2017
    Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nam D PhamDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Charles S FermainttDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Andrea C RodriguezDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Janet E McCombsDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Nicole NischanDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Jennifer J KohlerDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. jennifer.kohler@utsouthwestern.edu.ORCID http://orcid.org/0000-0001-5373-3329
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

MECHANISMS OF DRUG ACTION AND DISPOSITIONT32GM007062 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MANGELSDORF, DAVID J · 1985 to 2020
$7.4M
Study of sialoside function using photocrosslinking sialic acidR01GM090271 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI KOHLER, JENNIFER J · 2009 to 2021
$4.4M
Sialic acid has putative signaling roles in muscle disorders of agingF30AG040909 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI PHAM, NAM · 2011 to 2014
$119k
NIA NIH HHS F30 AG040909NIA NIH HHS F30AG040909NIGMS NIH HHS R01 GM090271NIGMS NIH HHS R01GM090271NIGMS NIH HHS T32 GM007062NIGMS NIH HHS T32GM007062
6 · The paper itself

Abstract

Carbohydrates, in addition to their metabolic functions, serve important roles as receptors, ligands, and structural molecules for diverse biological processes. Insight into carbohydrate biology and mechanisms has been aided by metabolic oligosaccharide engineering (MOE). In MOE, unnatural carbohydrate analogs with novel functional groups are incorporated into cellular glycoconjugates and used to probe biological systems. While MOE has expanded knowledge of carbohydrate biology, limited metabolism of unnatural carbohydrate analogs restricts its use. Here we assess metabolism of SiaDAz, a diazirine-modified analog of sialic acid, and its cell-permeable precursor, Ac4ManNDAz. We show that the efficiency of Ac4ManNDAz and SiaDAz metabolism depends on cell type. Our results indicate that different cell lines can have different metabolic roadblocks in the synthesis of cell surface SiaDAz. These findings point to roles for promiscuous intracellular esterases, kinases, and phosphatases during unnatural sugar metabolism and provide guidance for ways to improve MOE.

Indexed as

Metabolic EngineeringCarbohydrate MetabolismCarbohydratesCell LineDiazomethaneEsterasesFlow CytometryGlycoconjugatesHexosaminesHumansN-Acetylneuraminic AcidOligosaccharidesCarbohydratesDiazomethaneEsterasesGlycoconjugatesHexosaminesN-Acetylneuraminic AcidOligosaccharidesDiazirineEsteraseMetabolic engineeringPhotocrosslinkingSialic acid

Identifiers

PMID25957566
PMCPMC4641449
OpenAlexW820535299

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.