Evidence map›Paper›PMID 25957411›Full record

ArticleThe Journal of biological chemistry2015

Mutations in Nature Conferred a High Affinity Phosphatidylinositol 4,5-Bisphosphate-binding Site in Vertebrate Inwardly Rectifying Potassium Channels.

Qiong-Yao Tang, Trevor Larry, Kalen Hendra, Erica Yamamoto, Jessica Bell, Meng Cui, Diomedes E Logothetis, Linda M Boland

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. An affordable Three-Dimensional (3D) Printed Recording Chamber for Two-Electrode Voltage Clamp Electrophysiology.Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience · 2023
    Article
  3. Article
  4. Article
  5. Engineering an enhanced voltage-sensing phosphatase.The Journal of general physiology · 2020
    Article
  6. Modulation of KFrontiers in pharmacology · 2020
    Article
  7. Phosphatidylinositol 4,5-bisphosphate (PIPThe Journal of biological chemistry · 2019
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Qiong-Yao TangFrom the Department of Physiology and Biophysics, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23298, the Jiangsu Province Key Laboratory of Anesthesiology and Jiangsu Province Key Laboratory of Anesthesia and Analgesia Application Technology, XuZhou Medical College, Xuzhou, 221004 Jiangsu Province, China.
Trevor Larrythe Department of Biology, University of Richmond, Richmond, Virginia 23173.
Kalen Hendrathe Department of Biology, University of Richmond, Richmond, Virginia 23173.
Erica Yamamotothe Department of Biology, University of Richmond, Richmond, Virginia 23173.
Jessica Bellthe Department of Chemistry and Biochemistry, University of San Diego, San Diego, California 92110, and.
Meng CuiFrom the Department of Physiology and Biophysics, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23298.
Diomedes E LogothetisFrom the Department of Physiology and Biophysics, Virginia Commonwealth University School of Medicine, Richmond, Virginia 23298.
Linda M Bolandthe Department of Biology, University of Richmond, Richmond, Virginia 23173 lboland@richmond.edu.
University of Richmond · USVirginia Commonwealth University · USUniversity of San Diego · USXuzhou Medical College · CN

Funding

Structural Determinants of PIP2 RegulationR01HL059949 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Leigh Daniel Plant · 1998 to 2026
$11.6M
Modulation of Kir Channel Function by PhosphorylationR01HL090882 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI LOGOTHETIS, DIOMEDES E. · 2009 to 2012
$1.5M
Lipid Modulation of Potassium ChannelsR15GM096142 · NIGMS · UNIVERSITY OF RICHMOND · PI BOLAND, LINDA M. · 2011 to 2015
$562k
High Performance Computing Cluster for Biomedical Research at VCUS10RR027411 · NCRR · VIRGINIA COMMONWEALTH UNIVERSITY · PI CUI, MENG · 2010 to 2010
$417k
NCRR NIH HHS S10 RR027411NCRR NIH HHS S10RR027411NHLBI NIH HHS HL059949NHLBI NIH HHS HL090882NHLBI NIH HHS R01 HL059949NHLBI NIH HHS R01 HL090882NIGMS NIH HHS R15 GM096142NIGMS NIH HHS R15-GM096142
6 · The paper itself

Abstract

All vertebrate inwardly rectifying potassium (Kir) channels are activated by phosphatidylinositol 4,5-bisphosphate (PIP2) (Logothetis, D. E., Petrou, V. I., Zhang, M., Mahajan, R., Meng, X. Y., Adney, S. K., Cui, M., and Baki, L. (2015) Annu. Rev. Physiol. 77, 81-104; Fürst, O., Mondou, B., and D'Avanzo, N. (2014) Front. Physiol. 4, 404-404). Structural components of a PIP2-binding site are conserved in vertebrate Kir channels but not in distantly related animals such as sponges and sea anemones. To expand our understanding of the structure-function relationships of PIP2 regulation of Kir channels, we studied AqKir, which was cloned from the marine sponge Amphimedon queenslandica, an animal that represents the phylogenetically oldest metazoans. A requirement for PIP2 in the maintenance of AqKir activity was examined in intact oocytes by activation of a co-expressed voltage-sensing phosphatase, application of wortmannin (at micromolar concentrations), and activation of a co-expressed muscarinic acetylcholine receptor. All three mechanisms to reduce the availability of PIP2 resulted in inhibition of AqKir current. However, time-dependent rundown of AqKir currents in inside-out patches could not be re-activated by direct application to the inside membrane surface of water-soluble dioctanoyl PIP2, and the current was incompletely re-activated by the more hydrophobic arachidonyl stearyl PIP2. When we introduced mutations to AqKir to restore two positive charges within the vertebrate PIP2-binding site, both forms of PIP2 strongly re-activated the mutant sponge channels in inside-out patches. Molecular dynamics simulations validate the additional hydrogen bonding potential of the sponge channel mutants. Thus, nature's mutations conferred a high affinity activation of vertebrate Kir channels by PIP2, and this is a more recent evolutionary development than the structures that explain ion channel selectivity and inward rectification.

Indexed as

MutationAmino Acid MotifsAmino Acid SequenceAnimalsBinding SitesChickensEvolution, MolecularHumansKineticsMiceMolecular Sequence DataPhosphatidylinositol 4,5-DiphosphatePoriferaPotassium Channels, Inwardly RectifyingSequence AlignmentVertebratesPhosphatidylinositol 4,5-DiphosphatePotassium Channels, Inwardly Rectifyingevolutiongatinginositol phospholipidinwardly rectifyingIRK channelmolecular modelingpatch clampphosphatasespongeTEVC

Identifiers

PMID25957411
PMCPMC4505406
OpenAlexW2467239676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.