Evidence map›Paper›PMID 25956905›Full record

ArticleGenes & development2015

Selective modulation of the functions of a conserved DNA motor by a histone fold complex.

Xiaoyu Xue, Koyi Choi, Jacob N Bonner, Barnabas Szakal, Yu-Hung Chen, Alma Papusha, Dorina Saro, Hengyao Niu, Grzegorz Ira, Dana Branzei and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  11. Meiotic Recombination: The Essence of Heredity.Cold Spring Harbor perspectives in biology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Xiaoyu XueDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA;
Koyi ChoiMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA; Programs in Biochemistry, Cell, and Molecular Biology, Weill Graduate School of Medical Sciences of Cornell University, New York, New York 10065, USA;
Jacob N BonnerMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA; Programs in Biochemistry, Cell, and Molecular Biology, Weill Graduate School of Medical Sciences of Cornell University, New York, New York 10065, USA;
Barnabas SzakalIFOM, Fondazione Istituto FIRC di Oncologia Molecolare, Milan 20139, Italy;
Yu-Hung ChenMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA; Programs in Biochemistry, Cell, and Molecular Biology, Weill Graduate School of Medical Sciences of Cornell University, New York, New York 10065, USA;
Alma PapushaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Dorina SaroDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA;
Hengyao NiuDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA;
Grzegorz IraDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Dana BranzeiIFOM, Fondazione Istituto FIRC di Oncologia Molecolare, Milan 20139, Italy;
Patrick SungDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA;
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA; Programs in Biochemistry, Cell, and Molecular Biology, Weill Graduate School of Medical Sciences of Cornell University, New York, New York 10065, USA; zhaox1@mskcc.org.
Yale University · USCornell University · USBaylor College of Medicine · USFIRC Institute of Molecular Oncology · ITMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
Regulation of DNA recombination in Saccharomyces cerevisiaeR01GM080600 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI IRA, GRZEGORZ A · 2007 to 2024
$5.5M
TRAINING PROGRAM IN MOLECULAR AND CELLULAR BIOLOGYT32GM008539 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BROWN, ANTHONY M.C. · 1995 to 2020
$5.0M
The Rtt107 interactome structures and functionsR01GM080670 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI ZHAO, XIAOLAN · 2007 to 2021
$4.5M
FORMATION AND RESOLUTION OF RECOMBINATION INTERMEDIATESR01GM057814 · NIGMS · YALE UNIVERSITY · PI SUNG, PATRICK · 1999 to 2016
$4.2M
Roles of the RecQ Helicases BLM and RECQ5 in Genome MaintenanceR01ES015632 · NIEHS · YALE UNIVERSITY · PI SUNG, PATRICK · 2007 to 2017
$3.9M
Molecular Basis of BRCA2-mediated DNA Repair and Cancer AvoidanceR01ES015252 · NIEHS · YALE UNIVERSITY · PI SUNG, PATRICK · 2007 to 2016
$3.8M
Mechanisms and Crosstalk of DNA Break Resection PathwaysR00ES021441 · NIEHS · TRUSTEES OF INDIANA UNIVERSITY · PI NIU, HENGYAO · 2015 to 2017
$747k
Mechanisms and Crosstalk of DNA Break Resection PathwaysK99ES021441 · NIEHS · YALE UNIVERSITY · PI NIU, HENGYAO · 2012 to 2013
$180k
European Research Council 242928NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA013330NIEHS NIH HHS ES007061NIEHS NIH HHS ES015252NIEHS NIH HHS ES015632NIEHS NIH HHS K99 ES021441NIEHS NIH HHS K99/R00 ES021441NIEHS NIH HHS R00 ES021441NIEHS NIH HHS R01 ES007061NIEHS NIH HHS R01 ES015252NIEHS NIH HHS R01 ES015632NIGMS NIH HHS GM057814NIGMS NIH HHS GM080670NIGMS NIH HHS GM80600NIGMS NIH HHS R01 GM057814NIGMS NIH HHS R01 GM080600NIGMS NIH HHS R01 GM080670NIGMS NIH HHS T32 GM008539Telethon GGP12160
6 · The paper itself

Abstract

Budding yeast Mph1 helicase and its orthologs drive multiple DNA transactions. Elucidating the mechanisms that regulate these motor proteins is central to understanding genome maintenance processes. Here, we show that the conserved histone fold MHF complex promotes Mph1-mediated repair of damaged replication forks but does not influence the outcome of DNA double-strand break repair. Mechanistically, scMHF relieves the inhibition imposed by the structural maintenance of chromosome protein Smc5 on Mph1 activities relevant to replication-associated repair through binding to Mph1 but not DNA. Thus, scMHF is a function-specific enhancer of Mph1 that enables flexible response to different genome repair situations.

Indexed as

DEAD-box RNA HelicasesDNADNA-Binding ProteinsDNA RepairGenome, FungalHistonesMutationProtein BindingProtein FoldingProtein Structure, TertiaryRecombination, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDEAD-box RNA HelicasesDNADNA-Binding ProteinsHistonesMPH1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsDNA motor proteinsgenome replicationhistone fold proteinshomologous recombinationreplication fork repairstructural maintenance of chromosome proteins

Identifiers

PMID25956905
PMCPMC4441048
OpenAlexW1909193357

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.