Evidence map›Paper›PMID 25956881›Full record

ArticleJournal of experimental botany2015

The floral transcriptome of ylang ylang (Cananga odorata var. fruticosa) uncovers biosynthetic pathways for volatile organic compounds and a multifunctional and novel sesquiterpene synthase.

Jingjing Jin, Mi Jung Kim, Savitha Dhandapani, Jessica Gambino Tjhang, Jun-Lin Yin, Limsoon Wong, Rajani Sarojam, Nam-Hai Chua, In-Cheol Jang

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 90 citations in OpenAlex.

  1. A Review on Ylang-Ylang (Molecules (Basel, Switzerland) · 2026
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  8. Transcriptome Analyses Reveal the Aroma Terpeniods Biosynthesis Pathways ofInternational journal of molecular sciences · 2023
    Article
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  14. Antibacterial Activity of the Essential Oil FromFrontiers in microbiology · 2022
    Article
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  19. Molecular Cloning and Functional Characterization ofPlants (Basel, Switzerland) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jingjing JinTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604 School of Computing, National University of Singapore, Singapore 117417.
Mi Jung KimTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604.
Savitha DhandapaniTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604 Department of Biological Sciences, National University of Singapore, Singapore 117543.
Jessica Gambino TjhangTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604.
Jun-Lin YinTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604.
Limsoon WongSchool of Computing, National University of Singapore, Singapore 117417.
Rajani SarojamTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604.
Nam-Hai ChuaLaboratory of Plant Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA.
In-Cheol JangTemasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, Singapore 117604 Department of Biological Sciences, National University of Singapore, Singapore 117543 jangi@tll.org.sg.
National University of Singapore · SGTemasek Life Sciences Laboratory · SGRockefeller University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pleasant fragrance of ylang ylang varieties (Cananga odorata) is mainly due to volatile organic compounds (VOCs) produced by the flowers. Floral scents are a key factor in plant-insect interactions and are vital for successful pollination. C. odorata var. fruticosa, or dwarf ylang ylang, is a variety of ylang ylang that is popularly grown in Southeast Asia as a small shrub with aromatic flowers. Here, we describe the combined use of bioinformatics and chemical analysis to discover genes for the VOC biosynthesis pathways and related genes. The scented flowers of C. odorata var. fruticosa were analysed by gas chromatography/mass spectrometry and a total of 49 VOCs were identified at four different stages of flower development. The bulk of these VOCs were terpenes, mainly sesquiterpenes. To identify the various terpene synthases (TPSs) involved in the production of these essential oils, we performed RNA sequencing on mature flowers. From the RNA sequencing data, four full-length TPSs were functionally characterized. In vitro assays showed that two of these TPSs were mono-TPSs. CoTPS1 synthesized four products corresponding to β-thujene, sabinene, β-pinene, and α-terpinene from geranyl pyrophosphate and CoTPS4 produced geraniol from geranyl pyrophosphate. The other two TPSs were identified as sesqui-TPSs. CoTPS3 catalysed the conversion of farnesyl pyrophosphate to α-bergamotene, whereas CoTPS2 was found to be a multifunctional and novel TPS that could catalyse the synthesis of three sesquiterpenes, β-ylangene, β-copaene, and β-cubebene. Additionally, the activities of the two sesqui-TPSs were confirmed in planta by transient expression of these TPS genes in Nicotiana benthamiana leaves by Agrobacterium-mediated infiltration.

Indexed as

Alkyl and Aryl TransferasesBiosynthetic PathwaysCanangaFlowersGene Expression Regulation, PlantGene OntologyGenes, PlantMolecular Sequence AnnotationOils, VolatilePhylogenyReal-Time Polymerase Chain ReactionRecombinant ProteinsRNA, MessengerSequence Analysis, RNASubcellular FractionsTranscriptomeAlkyl and Aryl TransferasesOils, VolatileRecombinant ProteinsRNA, Messengerterpene synthaseVolatile Organic CompoundsCananga odorata var. fruticosafloral scentterpenesterpene synthasevolatile organic compoundsylang ylang.β-Copaeneβ-cubebeneβ-ylangene

Identifiers

PMID25956881
PMCPMC4473991
OpenAlexW2107679641

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.