Evidence map›Paper›PMID 25956862›Full record

ReviewDNA repair2015

Exonuclease 1-dependent and independent mismatch repair.

Eva M Goellner, Christopher D Putnam, Richard D Kolodner

Abstract readReview
In one paragraph

Review in DNA repair, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 144 citations in OpenAlex.

  1. Review
  2. Article
  3. Therapeutic targeting of mismatch repair-deficient cancers.Nature reviews. Clinical oncology · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
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  12. Article
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  14. Article
  15. Bridging biological samples to functional nucleic acid biosensor applications: current enzymatic-based strategies for single-stranded DNA generation.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2024
    Review
  16. Article
  17. EnterohemorrhagicInfection and immunity · 2024
    Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Eva M GoellnerLudwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA.
Christopher D PutnamLudwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA; Departments of Medicine, University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA.
Richard D KolodnerLudwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA; Departments of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA; Moores - UCSD Cancer Center, University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA; Institute of Genomic Medicine, University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, CA 92093-0669, USA. Electronic address: rkolodner@ucsd.edu.
University of California, San Diego · USLudwig Cancer Research · US

Funding

ENZYMOLOGY OF MISMATCH REPAIR IN YEASTR01GM050006 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Richard D Kolodner · 1994 to 2026
$10.5M
Understanding the role of PCNA in DNA mismatch repair subpathwaysF32GM106598 · NIGMS · LUDWIG INSTITUTE FOR CANCER RES LTD · PI GOELLNER, EVA MARIE · 2013 to 2014
$102k
NIGMS NIH HHS F32 GM106598NIGMS NIH HHS F32GM106598NIGMS NIH HHS R01 GM050006NIGMS NIH HHS R01GM50006
6 · The paper itself

Abstract

DNA mismatch repair (MMR) acts to repair mispaired bases resulting from misincorporation errors during DNA replication and also recognizes mispaired bases in recombination (HR) intermediates. Exonuclease 1 (Exo1) is a 5' → 3' exonuclease that participates in a number of DNA repair pathways. Exo1 was identified as an exonuclease that participates in Saccharomyces cerevisiae and human MMR where it functions to excise the daughter strand after mispair recognition, and additionally Exo1 functions in end resection during HR. However, Exo1 is not absolutely required for end resection during HR in vivo. Similarly, while Exo1 is required in MMR reactions that have been reconstituted in vitro, genetics studies have shown that it is not absolutely required for MMR in vivo suggesting the existence of Exo1-independent and Exo1-dependent MMR subpathways. Here, we review what is known about the Exo1-independent and Exo1-dependent subpathways, including studies of mutations in MMR genes that specifically disrupt either subpathway.

Indexed as

DNA Mismatch RepairGene Expression Regulation, FungalBase Pair MismatchDNA Breaks, Double-StrandedDNA, FungalDNA ReplicationExodeoxyribonucleasesHumansModels, MolecularMutationProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiaeDNA, Fungalexodeoxyribonuclease IExodeoxyribonucleasesDNA replication fidelityExcisionMispaired baseMlh1–Pms1Msh2–Msh6MutagenesisRecombination

Identifiers

PMID25956862
PMCPMC4522362
OpenAlexW2031324054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.