ArticlePloS one2015
The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 45 papers.
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45 citing papers in PubMed, 65 citations in OpenAlex.
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- Evolutionary genetics analysis for complete plastomes and diversification rate estimation of Deutzia and Philadelphus in tribe Philadelpheae (Hydrangeaceae).BMC plant biology · 2025Article
- Comparative chloroplast genomic analysis of Pithecellobium dulce (Roxb.) Benth 1844 and related species within Caesalpinioideae.Genetica · 2025Article
- Chloroplast genomic insights into adaptive evolution and rapid radiation in the genus Passiflora (Passifloraceae).BMC plant biology · 2025Article
- Characterization of the complete chloroplast genome of a woody invasive species,Mitochondrial DNA. Part B, Resources · 2025Article
- Dispersed repeats and inverted repeat expansion drive major plastomic rearrangements inFrontiers in plant science · 2025Article
- Plastome structure and phylogenetic relationships of genus Hydrocotyle (apiales): provide insights into the plastome evolution of Hydrocotyle.BMC plant biology · 2024Article
- Comparative genomics and phylogenomics of the genusFrontiers in pharmacology · 2024Article
- Genome survey and genetic characterization ofFrontiers in plant science · 2023Article
- Comparative phylogenetic analysis of oolong tea (Heliyon · 2022Article
- Gene duplication and rate variation in the evolution of plastid ACCase and Clp genes in angiosperms.Molecular phylogenetics and evolution · 2022Article
- Rapid sequence evolution is associated with genetic incompatibilities in the plastid Clp complex.Plant molecular biology · 2022Article
- Complete Chloroplast Genome of the Inverted Repeat-Lacking SpeciesFrontiers in plant science · 2022Article
- Comparative analysis of plastomes in Oxalidaceae: Phylogenetic relationships and potential molecular markers.Plant diversity · 2021Article
- Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications.Scientific reports · 2021Article
- Screening and verification of extranuclear genetic markers in green tide algae from the Yellow Sea.PloS one · 2021Article
- Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation.American journal of botany · 2020Article
- PACVr: plastome assembly coverage visualization in R.BMC bioinformatics · 2020Article
- Large-scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near-simultaneous evolutionary origin of all six subfamilies.The New phytologist · 2020Article
Corrections and comments
- Erratum issued
Authors and funding
5 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Legumes are a highly diverse angiosperm family that include many agriculturally important species. To date, 21 complete chloroplast genomes have been sequenced from legume crops confined to the Papilionoideae subfamily. Here we report the first chloroplast genome from the Mimosoideae, Acacia ligulata, and compare it to the previously sequenced legume genomes. The A. ligulata chloroplast genome is 174,233 bp in size, comprising inverted repeats of 38,225 bp and single-copy regions of 92,798 bp and 4,985 bp [corrected]. Acacia ligulata lacks the inversion present in many of the Papilionoideae, but is not otherwise significantly different in terms of gene and repeat content. The key feature is its highly divergent clpP1 gene, normally considered essential in chloroplast genomes. In A. ligulata, although transcribed and spliced, it probably encodes a catalytically inactive protein. This study provides a significant resource for further genetic research into Acacia and the Mimosoideae. The divergent clpP1 gene suggests that Acacia will provide an interesting source of information on the evolution and functional diversity of the chloroplast Clp protease complex.
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