Evidence map›Paper›PMID 25955156›Full record

ArticlePLoS computational biology2015

Understanding Voltage Gating of Providencia stuartii Porins at Atomic Level.

Wanling Song, Harsha Bajaj, Chady Nasrallah, Hualiang Jiang, Mathias Winterhalter, Jacques-Philippe Colletier, Yechun Xu

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Understanding Drug Permeability inLife (Basel, Switzerland) · 2025
    Review
  2. Article
  3. Article
  4. Porin self-association enables cell-to-cell contact inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Wanling SongCAS Key Laboratory of Receptor Research, Drug Discovery and Design Centre, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai, China.
Harsha BajajSchool of Engineering and Sciences, Jacobs University Bremen, Bremen, Germany.
Chady NasrallahUniversity Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France; CNRS, Institut de Biologie Structurale (IBS), Grenoble, France; CEA, Institut de Biologie Structurale (IBS), Grenoble, France.
Hualiang JiangCAS Key Laboratory of Receptor Research, Drug Discovery and Design Centre, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai, China.
Mathias WinterhalterSchool of Engineering and Sciences, Jacobs University Bremen, Bremen, Germany.
Jacques-Philippe ColletierUniversity Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France; CNRS, Institut de Biologie Structurale (IBS), Grenoble, France; CEA, Institut de Biologie Structurale (IBS), Grenoble, France.
Yechun XuCAS Key Laboratory of Receptor Research, Drug Discovery and Design Centre, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai, China.
Chinese Academy of Sciences · CNConstructor University · DEUniversité Grenoble Alpes · FRShanghai Institute of Materia Medica · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial porins are water-filled β-barrel channels that allow translocation of solutes across the outer membrane. They feature a constriction zone, contributed by the plunging of extracellular loop 3 (L3) into the channel lumen. Porins are generally in the open state, but undergo gating in response to external voltages. To date the underlying mechanism is unclear. Here we report results from molecular dynamics simulations on the two porins of Providenica stuartii, Omp-Pst1 and Omp-Pst2, which display distinct voltage sensitivities. Voltage gating was observed in Omp-Pst2, where the binding of cations in-between L3 and the barrel wall results in exposing a conserved aromatic residue in the channel lumen, thereby halting ion permeation. Comparison of Omp-Pst1 and Omp-Pst2 structures and trajectories suggests that their sensitivity to voltage is encoded in the hydrogen-bonding network anchoring L3 onto the barrel wall, as we observed that it is the strength of this network that governs the probability of cations binding behind L3. That Omp-Pst2 gating is observed only when ions flow against the electrostatic potential gradient of the channel furthermore suggests a possible role for this porin in the regulation of charge distribution across the outer membrane and bacterial homeostasis.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsBinding SitesComputational BiologyComputer SimulationHydrogen BondingIon Channel GatingModels, BiologicalModels, MolecularMolecular Dynamics SimulationPorinsProvidenciaStatic ElectricityBacterial Outer Membrane ProteinsBacterial ProteinsPorins

Identifiers

PMID25955156
PMCPMC4425685
OpenAlexW317533558

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.