Evidence map›Paper›PMID 25955014›Full record

ArticleAutophagy2015

Divergent roles of BECN1 in LC3 lipidation and autophagosomal function.

Ruina He, Jingyu Peng, Pengfei Yuan, Fang Xu, Wensheng Wei

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Autophagy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 53 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 2 pooled it
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 2 syntheses or guidelines pooled it, 76 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Ruina Hea Biodynamic Optical Imaging Center (BIOPIC); Peking-Tsinghua Center for Life Sciences; State Key Laboratory of Protein and Plant Gene Research; School of Life Sciences; Peking University ; Beijing , China.
Jingyu Peng
Pengfei Yuan
Fang Xu
Wensheng Wei
Center for Life Sciences · CNPeking University · CNTsinghua University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BECN1/Beclin 1 is regarded as a critical component in the class III phosphatidylinositol 3-kinase (PtdIns3K) complex to trigger autophagy in mammalian cells. Despite its significant role in a number of cellular and physiological processes, the exact function of BECN1 in autophagy remains controversial. Here we created a BECN1 knockout human cell line using the TALEN technique. Surprisingly, the complete loss of BECN1 had little effect on LC3 (MAP1LC3B/LC3B) lipidation, and LC3B puncta resembling autophagosomes by fluorescence microscopy were still evident albeit significantly smaller than those in the wild-type cells. Electron microscopy (EM) analysis revealed that BECN1 deficiency led to malformed autophagosome-like structures containing multiple layers of membranes under amino acid starvation. We further confirmed that the PtdIns3K complex activity and autophagy flux were disrupted in BECN1(-/-) cells. Our results demonstrate the essential role of BECN1 in the functional formation of autophagosomes, but not in LC3B lipidation.

Indexed as

AutophagyApoptosis Regulatory ProteinsBase SequenceBeclin-1Class III Phosphatidylinositol 3-KinasesHeLa CellsHumansLipidsMembrane ProteinsMicrotubule-Associated ProteinsMolecular Sequence DataPhagosomesApoptosis Regulatory ProteinsBeclin-1BECN1 protein, humanClass III Phosphatidylinositol 3-KinasesLipidsMAP1LC3A protein, humanMembrane ProteinsMicrotubule-Associated ProteinsATG, autophagy relatedautophagosomeautophagyBafA1, bafilomycin A1BCL2L1/Bcl-xL, BCL2-like 1BECN1BECN1, Beclin 1, autophagy relatedBECN1P1/BECN2, Beclin 1, autophagy related, pseudogene 1EM, electron microscopyGAPDH, glyceraldehyde-3-phosphate dehydrogenaseGFP, green fluorescent proteinKO, knockoutLC3MAP1LC3B/LC3B, microtubule-associated protein 1 light chain 3 βMAP1LC3-II/LC3-II, proteolytically processed and lipid-modified microtubule-associated protein 1 light chain 3MAP1LC3-I/LC3-I, soluble, proteolytically processed microtubule-associated protein 1 light chain 3MAP1LC3/LC3, microtubule-associated protein 1 light chain 3PIK3C3/VPS34, phosphatidylinositol 3-kinase, catalytic subunit type 3PIK3R4/VPS15, phosphoinositide-3-kinase, regulatory subunit 4PtdIns3KPtdIns3K, phosphatidylinositol 3-kinaseSQSTM1/p62, sequestosome 1TALEN, transcription activator-like effector nucleaseTUBB, tubulin, β class IUVRAG, UV radiation resistance associatedZFYVE1/DFCP1, zinc finger, FYVE domain containing 1.

Identifiers

PMID25955014
PMCPMC4509441
OpenAlexW1813408973

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.