Evidence map›Paper›PMID 25954895›Full record

ArticleBiophysical journal2015

Anomalous extracellular diffusion in rat cerebellum.

Fanrong Xiao, Jan Hrabe, Sabina Hrabetova

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Transport in the Brain Extracellular Space: Diffusion, but Which Kind?International journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Unveiling the Extracellular Space of the Brain: From Super-resolved Microstructure toThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Review
  15. Review
  16. Photoactivatable fluorescent probes reveal heterogeneous nanoparticle permeation through biological gels at multiple scales.Journal of controlled release : official journal of the Controlled Release Society · 2017
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Fanrong XiaoDepartment of Cell Biology, State University of New York, Downstate Medical Center, Brooklyn, New York.
Jan HrabeDepartment of Cell Biology, State University of New York, Downstate Medical Center, Brooklyn, New York; Medical Physics Laboratory, Nathan S. Kline Institute, Orangeburg, New York.
Sabina HrabetovaDepartment of Cell Biology, State University of New York, Downstate Medical Center, Brooklyn, New York; The Robert F. Furchgott Center for Neural and Behavioral Science, State University of New York Downstate Medical Center, Brooklyn, New York. Electronic address: sabina.hrabetova@downstate.edu.
State University of New York · USNathan Kline Institute for Psychiatric Research · US

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
DIFFUSION OF SUBSTANCES THROUGH THE BRAINR01NS028642 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NICHOLSON, CHARLES · 1990 to 2013
$4.4M
Dynamic Microdomains in Brain Extracellular SpaceR01NS047557 · NINDS · SUNY DOWNSTATE MEDICAL CENTER · PI HRABETOVA, SABINA · 2004 to 2014
$2.6M
Dynamic Microdomains in Brain Extracellular SpaceR56NS047557 · NINDS · SUNY DOWNSTATE MEDICAL CENTER · PI HRABETOVA, SABINA · 2010 to 2010
$363k
NIGMS NIH HHS P41 GM103712NIGMS NIH HHS P41GM103712NINDS NIH HHS R01 NS028642NINDS NIH HHS R01 NS047557NINDS NIH HHS R56 NS047557NINDS NIH HHS R56NS047557
6 · The paper itself

Abstract

Extracellular space (ECS) is a major channel transporting biologically active molecules and drugs in the brain. Diffusion-mediated transport of these substances is hindered by the ECS structure but the microscopic basis of this hindrance is not fully understood. One hypothesis proposes that the hindrance originates in large part from the presence of dead-space (DS) microdomains that can transiently retain diffusing molecules. Because previous theoretical and modeling work reported an initial period of anomalous diffusion in similar environments, we expected that brain regions densely populated by DS microdomains would exhibit anomalous extracellular diffusion. Specifically, we targeted granular layers (GL) of rat and turtle cerebella that are populated with large and geometrically complex glomeruli. The integrative optical imaging (IOI) method was employed to evaluate diffusion of fluorophore-labeled dextran (MW 3000) in GL, and the IOI data analysis was adapted to quantify the anomalous diffusion exponent dw from the IOI records. Diffusion was significantly anomalous in rat GL, where dw reached 4.8. In the geometrically simpler turtle GL, dw was elevated but not robustly anomalous (dw = 2.6). The experimental work was complemented by numerical Monte Carlo simulations of anomalous ECS diffusion in several three-dimensional tissue models containing glomeruli-like structures. It demonstrated that both the duration of transiently anomalous diffusion and the anomalous exponent depend on the size of model glomeruli and the degree of their wrapping. In conclusion, we have found anomalous extracellular diffusion in the GL of rat cerebellum. This finding lends support to the DS microdomain hypothesis. Transiently anomalous diffusion also has a profound effect on the spatiotemporal distribution of molecules released into the ECS, especially at diffusion distances on the order of a few cell diameters, speeding up short-range diffusion-mediated signals in less permeable structures.

Indexed as

AnimalsBiological TransportCerebellumDextransDiffusionExtracellular SpaceFemaleRatsRats, Sprague-DawleyDextrans

Identifiers

PMID25954895
PMCPMC4423038
OpenAlexW1583185485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.