ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2014
Automated extraction of family history information from clinical notes.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 2 of them syntheses that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
24 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Can antiepileptic efficacy and epilepsy variables be studied from electronic health records? A review of current approaches.Seizure · 2021Pooled it
- Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review.Journal of biomedical informatics · 2017Pooled it
- Safety-First Framework for AI-Enabled Anamnesis in Head and Neck Surgery: Evidence Synthesis from a Narrative Review.Journal of clinical medicine · 2026Review
- Integrating rule-based NLP and large language models for statin information extraction from clinical notes.International journal of medical informatics · 2026Article
- Zero-shot Learning with Minimum Instruction to Extract Social Determinants and Family History from Clinical Notes using GPT Model.Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data · 2023Article
- Characterizing Autism Spectrum Disorder and Predicting Suicide Risk for Pediatric Psychiatric Emergency Services Encounters.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023Article
- Identifying Patients Who Meet Criteria for Genetic Testing of Hereditary Cancers Based on Structured and Unstructured Family Health History Data in the Electronic Health Record: Natural Language Processing Approach.JMIR medical informatics · 2022Article
- Synthetic data for annotation and extraction of family history information from clinical text.Journal of biomedical semantics · 2021Article
- Extracting Family History Information From Electronic Health Records: Natural Language Processing Analysis.JMIR medical informatics · 2021Article
- A Hybrid Model for Family History Information Identification and Relation Extraction: Development and Evaluation of an End-to-End Information Extraction System.JMIR medical informatics · 2021Article
- Comparison of family health history in surveys vs electronic health record data mapped to the observational medical outcomes partnership data model in the All of Us Research Program.Journal of the American Medical Informatics Association : JAMIA · 2021Article
- Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition.JMIR medical informatics · 2021Article
- Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models.JMIR medical informatics · 2020Article
- Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison.BMC medical informatics and decision making · 2019Article
- Article
- Defining Phenotypes from Clinical Data to Drive Genomic Research.Annual review of biomedical data science · 2018Article
- Generalized Extraction and Classification of Span-Level Clinical Phrases.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
- Automatic Genetic Risk Assessment Calculation Using Breast Cancer Family History Data from the EHR compared to Self-Report.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
- Systematic Analysis of Free-Text Family History in Electronic Health Record.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2017Article
- Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2016Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
Despite increased functionality for obtaining family history in a structured format within electronic health record systems, clinical notes often still contain this information. We developed and evaluated an Unstructured Information Management Application (UIMA)-based natural language processing (NLP) module for automated extraction of family history information with functionality for identifying statements, observations (e.g., disease or procedure), relative or side of family with attributes (i.e., vital status, age of diagnosis, certainty, and negation), and predication ("indicator phrases"), the latter of which was used to establish relationships between observations and family member. The family history NLP system demonstrated F-scores of 66.9, 92.4, 82.9, 57.3, 97.7, and 61.9 for detection of family history statements, family member identification, observation identification, negation identification, vital status, and overall extraction of the predications between family members and observations, respectively. While the system performed well for detection of family history statements and predication constituents, further work is needed to improve extraction of certainty and temporal modifications.
Indexed as
Identifiers
25954443PMC4419952What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.