Evidence map›Paper›PMID 25953951›Full record

ReviewGenome research2015

Contrasting genetic architectures in different mouse reference populations used for studying complex traits.

David A Buchner, Joseph H Nadeau

Open access · bronzeAbstract readReview
In one paragraph

Review in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 64 citations in OpenAlex.

  1. Deconstruction ofbioRxiv : the preprint server for biology · 2026
    Article
  2. Establishing the hybrid rat diversity program: a resource for dissecting complex traits.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genetics of murine type 2 diabetes and comorbidities.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. The Genetics of Variation of the Wave 1 Amplitude of the Mouse Auditory Brainstem Response.Journal of the Association for Research in Otolaryngology : JARO · 2020
    Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. eLife · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

David A BuchnerDepartment of Genetics and Genome Sciences, Department of Biochemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA;
Joseph H NadeauPacific Northwest Diabetes Research Institute, Seattle, Washington 98122, USA.
Case Western Reserve University · USPacific Northwest Diabetes Research Institute · US

Funding

MOUSE GENETIC RESOURCES FOR MULTIGENIC DISEASE ANALYSIS: AIDSP40RR012305 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI BERGER, NATHAN A. · 1996 to 2011
$6.8M
GENETIC CONTROL OF SUSCEPTIBILITY TO TESTICULAR CANCERR01CA075056 · NCI · PACIFIC NORTHWEST RESEARCH INSTITUTE · PI NADEAU, JOSEPH H. · 1998 to 2014
$5.7M
GENETIC DETERMINATION OF SKELETAL FRAGILITYR01AR044927 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JEPSEN, KARL J · 2002 to 2014
$4.3M
Lamarck Redux: Transgenerational genetic effects on phenotypes and diseaseDP1HD075624 · NICHD · PACIFIC NORTHWEST RESEARCH INSTITUTE · PI NADEAU, JOSEPH H. · 2012 to 2014
$2.6M
Transgenerational Effects of Drug-exposure: Epigenetic and Behavioral ImpactR01DA033646 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S., BLENDY, JULIE A · 2012 to 2016
$2.1M
Cntnp2 in diet-induced obesityK01DK084079 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BUCHNER, DAVID A · 2010 to 2014
$741k
Genetic Determination of Skeletal FragilityR56AR044927 · NIAMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI JEPSEN, KARL J · 2009 to 2009
$500k
GENETIC DETERMINATION OF SKELETAL FRAGILITYR29AR044927 · NIAMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI JEPSEN, KARL J · 1998 to 2002
$268k
Epistatic Regulation of Gene ExpressionR03DK099533 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI BUCHNER, DAVID A · 2014 to 2015
$159k
NCCDPHP CDC HHS DP1HD075624NCI NIH HHS CA75056NCI NIH HHS R01 CA075056NCRR NIH HHS P40 RR012305NCRR NIH HHS RR12305NIAMS NIH HHS AR044927NIAMS NIH HHS R01 AR044927NIAMS NIH HHS R29 AR044927NIAMS NIH HHS R56 AR044927NICHD NIH HHS DP1 HD075624NIDA NIH HHS DA033646NIDA NIH HHS R01 DA033646NIDDK NIH HHS DK084079NIDDK NIH HHS DK099533NIDDK NIH HHS K01 DK084079NIDDK NIH HHS R03 DK099533
6 · The paper itself

Abstract

Quantitative trait loci (QTLs) are being used to study genetic networks, protein functions, and systems properties that underlie phenotypic variation and disease risk in humans, model organisms, agricultural species, and natural populations. The challenges are many, beginning with the seemingly simple tasks of mapping QTLs and identifying their underlying genetic determinants. Various specialized resources have been developed to study complex traits in many model organisms. In the mouse, remarkably different pictures of genetic architectures are emerging. Chromosome Substitution Strains (CSSs) reveal many QTLs, large phenotypic effects, pervasive epistasis, and readily identified genetic variants. In contrast, other resources as well as genome-wide association studies (GWAS) in humans and other species reveal genetic architectures dominated with a relatively modest number of QTLs that have small individual and combined phenotypic effects. These contrasting architectures are the result of intrinsic differences in the study designs underlying different resources. The CSSs examine context-dependent phenotypic effects independently among individual genotypes, whereas with GWAS and other mouse resources, the average effect of each QTL is assessed among many individuals with heterogeneous genetic backgrounds. We argue that variation of genetic architectures among individuals is as important as population averages. Each of these important resources has particular merits and specific applications for these individual and population perspectives. Collectively, these resources together with high-throughput genotyping, sequencing and genetic engineering technologies, and information repositories highlight the power of the mouse for genetic, functional, and systems studies of complex traits and disease models.

Indexed as

GenotypePhenotypeQuantitative Trait LociAnimalsChromosomesCrosses, GeneticEpigenomicsEpistasis, GeneticGene Regulatory NetworksGenetic Association StudiesGenotyping TechniquesHigh-Throughput Screening AssaysHumansMeta-Analysis as TopicMiceMice, Inbred Strains

Identifiers

PMID25953951
PMCPMC4448675
OpenAlexW1875965364

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.