Evidence map›Paper›PMID 25953903›Full record

ArticleThe Journal of biological chemistry2015

Coupling of Conformational Transitions in the N-terminal Domain of the 51-kDa FK506-binding Protein (FKBP51) Near Its Site of Interaction with the Steroid Receptor Proteins.

David M LeMaster, Sourajit M Mustafi, Matthew Brecher, Jing Zhang, Annie Héroux, Hongmin Li, Griselda Hernández

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

  1. Propagation of conformational instability in FK506-binding protein FKBP12.Biochimica et biophysica acta. Proteins and proteomics · 2024
    Article
  2. Article
  3. Article
  4. Review
  5. The Many Faces of FKBP51.Biomolecules · 2019
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

David M LeMasterWadsworth Center, New York State Department of Health, Albany, New York 12201; Department of Biomedical Sciences, School of Public Health, University at Albany, SUNY, Albany, New York 12201.
Sourajit M MustafiWadsworth Center, New York State Department of Health, Albany, New York 12201.
Matthew BrecherWadsworth Center, New York State Department of Health, Albany, New York 12201.
Jing ZhangWadsworth Center, New York State Department of Health, Albany, New York 12201.
Annie HérouxBrookhaven National Laboratory, Upton, New York 11973-5000.
Hongmin LiWadsworth Center, New York State Department of Health, Albany, New York 12201; Department of Biomedical Sciences, School of Public Health, University at Albany, SUNY, Albany, New York 12201.
Griselda HernándezWadsworth Center, New York State Department of Health, Albany, New York 12201; Department of Biomedical Sciences, School of Public Health, University at Albany, SUNY, Albany, New York 12201. Electronic address: griselda.hernandez@health.ny.gov.
New York State Department of Health · USWadsworth Center · USBrookhaven National Laboratory · US

Funding

Amide Acidity Analysis of Intrinsic and Ligand-induced Flexibility and AllosteryR01GM088214 · NIGMS · WADSWORTH CENTER · PI HERNANDEZ, GRISELDA · 2009 to 2012
$971k
NIGMS NIH HHS GM088214NIGMS NIH HHS R01 GM088214
6 · The paper itself

Abstract

Interchanging Leu-119 for Pro-119 at the tip of the β4-β5 loop in the first FK506 binding domain (FK1) of the FKBP51 and FKBP52 proteins, respectively, has been reported to largely reverse the inhibitory (FKBP51) or stimulatory (FKBP52) effects of these co-chaperones on the transcriptional activity of glucocorticoid and androgen receptor-protein complexes. Previous NMR relaxation studies have identified exchange line broadening, indicative of submillisecond conformational motion, throughout the β4-β5 loop in the FK1 domain of FKBP51, which are suppressed by the FKBP52-like L119P substitution. This substitution also attenuates exchange line broadening in the underlying β2 and β3a strands that is centered near a bifurcated main chain hydrogen bond interaction between these two strands. The present study demonstrates that these exchange line broadening effects arise from two distinct coupled conformational transitions, and the transition within the β2 and β3a strands samples a transient conformation that resembles the crystal structures of the selectively inhibited FK1 domain of FKBP51 recently reported. Although the crystal structures for their series of inhibitors were interpreted as evidence for an induced fit mechanism of association, the presence of a similar conformation being significantly populated in the unliganded FKBP51 domain is more consistent with a conformational selection binding process. The contrastingly reduced conformational plasticity of the corresponding FK1 domain of FKBP52 is consistent with the current model in which FKBP51 binds to both the apo- and hormone-bound forms of the steroid receptor to modulate its affinity for ligand, whereas FKBP52 binds selectively to the latter state.

Indexed as

Models, MolecularAmino Acid SubstitutionHumansMutation, MissenseNuclear Magnetic Resonance, BiomolecularProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryReceptors, AndrogenReceptors, GlucocorticoidTacrolimus Binding Protein 5Tacrolimus Binding ProteinsReceptors, AndrogenReceptors, GlucocorticoidTacrolimus Binding Protein 5Tacrolimus Binding Proteinsallosteric regulationconformational changenuclear magnetic resonance (NMR)prolyl isomerasex-ray crystallography

Identifiers

PMID25953903
PMCPMC4505484
OpenAlexW1483278983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.