Evidence map›Paper›PMID 25953851›Full record

ArticleNucleic acids research2015

The MEME Suite.

Timothy L Bailey, James Johnson, Charles E Grant, William S Noble

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3,121 papers.

0numbers the graph read from it
0cells of the map it votes in
3,121citing papers in PubMed
47.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3,121 citing papers in PubMed, 5,223 citations in OpenAlex.

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  18. Phosphoproteomic dysregulation promotes tumor proliferation in Cushing's disease.Proceedings of the National Academy of Sciences of the United States of America · 2026
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3,061 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Timothy L BaileyInstitute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Queensland, Australia t.bailey@uq.edu.au.
James JohnsonInstitute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Queensland, Australia.
Charles E GrantDepartment of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, WA 98109, USA.
William S NobleDepartment of Genome Sciences, Department of Computer Science and Engineering, University of Washington, Seattle, WA 98109, USA william-noble@uw.edu.
University of Washington · USUniversity of Queensland · AU

Funding

The MEME Suite of motif-based sequence analysis toolsR01GM103544 · NIGMS · UNIVERSITY OF WASHINGTON · PI BAILEY, TIMOTHY L · 2012 to 2020
$2.4M
NIGMS NIH HHS R01 GM103544
6 · The paper itself

Abstract

The MEME Suite is a powerful, integrated set of web-based tools for studying sequence motifs in proteins, DNA and RNA. Such motifs encode many biological functions, and their detection and characterization is important in the study of molecular interactions in the cell, including the regulation of gene expression. Since the previous description of the MEME Suite in the 2009 Nucleic Acids Research Web Server Issue, we have added six new tools. Here we describe the capabilities of all the tools within the suite, give advice on their best use and provide several case studies to illustrate how to combine the results of various MEME Suite tools for successful motif-based analyses. The MEME Suite is freely available for academic use at http://meme-suite.org, and source code is also available for download and local installation.

Indexed as

Amino Acid MotifsNucleotide MotifsSoftwareDNAInternetPlasmodium falciparumProtein Interaction Domains and MotifsProtein Sorting SignalsProtozoan ProteinsReceptors, CalcitriolSequence Analysis, DNASequence Analysis, ProteinSequence Analysis, RNADNAProtein Sorting SignalsProtozoan ProteinsReceptors, Calcitriol

Identifiers

PMID25953851
PMCPMC4489269
OpenAlexW1709815505

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.