Evidence map›Paper›PMID 25953765›Full record

ArticleMolecular systems biology2015

Fractional killing arises from cell-to-cell variability in overcoming a caspase activity threshold.

Jérémie Roux, Marc Hafner, Samuel Bandara, Joshua J Sims, Hannah Hudson, Diana Chai, Peter K Sorger

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
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  8. Review
  9. Article
  10. Cell cycle plasticity underlies fractional resistance to palbociclib in ER+/HER2- breast tumor cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Optimal inference of molecular interaction dynamics in FRET microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Cell survival following direct executioner-caspase activation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Review
  18. Coupling live-cell imaging andSTAR protocols · 2022
    Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jérémie RouxDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Marc HafnerDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Samuel BandaraDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Joshua J SimsDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Hannah HudsonMerrimack Pharmaceuticals, Cambridge, MA, USA.
Diana ChaiMerrimack Pharmaceuticals, Cambridge, MA, USA.
Peter K SorgerDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA peter_sorger@hms.harvard.edu.
Harvard University · USCenter for Systems Biology · USMerrimack Pharmaceuticals (United States) · US

Funding

Pharmaco Response Signatures and Disease MechanismU54HL127365 · NHLBI · HARVARD MEDICAL SCHOOL · PI SORGER, PETER KARL · 2014 to 2019
$13.1M
Quantitative Analysis of Cell Death Pathways in CancerP01CA139980 · NCI · HARVARD MEDICAL SCHOOL · PI WEISSLEDER, MD, PHD, RALPH · 2010 to 2014
$9.0M
NCI NIH HHS CA139980NCI NIH HHS P01 CA139980NHLBI NIH HHS HL127365NHLBI NIH HHS U54 HL127365
6 · The paper itself

Abstract

When cells are exposed to death ligands such as TRAIL, a fraction undergoes apoptosis and a fraction survives; if surviving cells are re-exposed to TRAIL, fractional killing is once again observed. Therapeutic antibodies directed against TRAIL receptors also cause fractional killing, even at saturating concentrations, limiting their effectiveness. Fractional killing arises from cell-to-cell fluctuations in protein levels (extrinsic noise), but how this results in a clean bifurcation between life and death remains unclear. In this paper, we identify a threshold in the rate and timing of initiator caspase activation that distinguishes cells that live from those that die; by mapping this threshold, we can predict fractional killing of cells exposed to natural and synthetic agonists alone or in combination with sensitizing drugs such as bortezomib. A phenomenological model of the threshold also quantifies the contributions of two resistance genes (c-FLIP and Bcl-2), providing new insight into the control of cell fate by opposing pro-death and pro-survival proteins and suggesting new criteria for evaluating the efficacy of therapeutic TRAIL receptor agonists.

Indexed as

ApoptosisBortezomibCASP8 and FADD-Like Apoptosis Regulating ProteinCaspase 8Cell SurvivalHEK293 CellsHeLa CellsHumansModels, BiologicalProteasome Endopeptidase ComplexProto-Oncogene Proteins c-bcl-2TNF-Related Apoptosis-Inducing LigandBortezomibCASP8 and FADD-Like Apoptosis Regulating ProteinCASP8 protein, humanCaspase 8CFLAR protein, humanProteasome Endopeptidase ComplexProto-Oncogene Proteins c-bcl-2TNF-Related Apoptosis-Inducing Ligandanti‐cancer therapeutic antibodiesapoptosisDR4, DR5 receptorsprogrammed cell deathTRAIL

Identifiers

PMID25953765
PMCPMC4461398
OpenAlexW2153612800

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.