Evidence map›Paper›PMID 25953511›Full record

ArticleFunctional & integrative genomics2015

Soy glyceollins regulate transcript abundance in the female mouse brain.

Sanaya F Bamji, Robert B Page, Dharti Patel, Alexia Sanders, Alejandro R Alvarez, Caitlin Gambrell, Kuntesh Naik, Ashwin M Raghavan, Matthew E Burow, Stephen M Boue and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Functional & integrative genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Risks and benefits related to alimentary exposure to xenoestrogens.Critical reviews in food science and nutrition · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Sanaya F BamjiDepartment of Biology, University of Louisville, Rm 139, Louisville, KY, 40292, USA.
Robert B Page
Dharti Patel
Alexia Sanders
Alejandro R Alvarez
Caitlin Gambrell
Kuntesh Naik
Ashwin M Raghavan
Matthew E Burow
Stephen M Boue
Carolyn M Klinge
Margarita Ivanova
Cynthia Corbitt
University of Louisville Hospital · USSaint Joseph Seminary College · USSouthern Regional Research Center · USTulane University · USUniversity of Louisville · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
PROJECT 3 - Steroid-Metabolic Interactions In the Control of GnRH NeuronsU54HD028934 · NICHD · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI MARSHALL, JOHN C · 1998 to 2013
$16.5M
Strategic Vision & Impact on Environmental HealthP30ES014443 · NIEHS · UNIVERSITY OF LOUISVILLE · PI PROUGH, RUSSELL ALLEN · 2007 to 2010
$4.4M
NICHD NIH HHS U54 HD028934NICHD NIH HHS U54-HD28934NIEHS NIH HHS P30 ES014443NIEHS NIH HHS P30ES014443NIGMS NIH HHS P20 GM103436NIGMS NIH HHS P20GM103436
6 · The paper itself

Abstract

Glyceollins (Glys), produced by soy plants in response to stress, have anti-estrogenic activity in breast and ovarian cancer cell lines in vitro and in vivo. In addition to known anti-estrogenic effects, Gly exhibits mechanisms of action not involving estrogen receptor (ER) signaling. To date, effects of Gly on gene expression in the brain are unknown. For this study, we implanted 17-β estradiol (E2) or placebo slow-release pellets into ovariectomized CFW mice followed by 11 days of exposure to Gly or vehicle i.p. injections. We then performed a microarray on total RNA extracted from whole-brain hemispheres and identified differentially expressed genes (DEGs) by a 2 × 2 factorial ANOVA with an false discovery rate (FDR) = 0.20. In total, we identified 33 DEGs with a significant E2 main effect, 5 DEGs with a significant Gly main effect, 74 DEGs with significant Gly and E2 main effects (but no significant interaction term), and 167 DEGs with significant interaction terms. Clustering across all DEGs revealed that transcript abundances were similar between the E2 + Gly and E2-only treatments. However, gene expression after Gly-only treatment was distinct from both of these treatments and was generally characterized by higher transcript abundance. Collectively, our results suggest that whether Gly acts in the brain through ER-dependent or ER-independent mechanisms depends on the target gene.

Indexed as

AnimalsBrainDrug Evaluation, PreclinicalEstradiolEstrogen Receptor ModulatorsFemaleMicePterocarpansRNA, MessengerTranscriptional ActivationTranscriptomeEstradiolEstrogen Receptor ModulatorsglyceollinPterocarpansRNA, Messenger

Identifiers

PMID25953511
PMCPMC4561188
OpenAlexW601190914

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.