Evidence map›Paper›PMID 25953173›Full record

ArticleGenome announcements2015

Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601.

Shaila Yerrapragada, Animesh Shukla, Kymberlie Hallsworth-Pepin, Kwangmin Choi, Aye Wollam, Sandra Clifton, Xiang Qin, Donna Muzny, Sriram Raghuraman, Haleh Ashki and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Responding to light signals: a comprehensive update on photomorphogenesis in cyanobacteria.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Shaila YerrapragadaHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Animesh ShuklaDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Kymberlie Hallsworth-PepinThe Genome Institute, Washington University in St. Louis, St. Louis, Missouri, USA.
Kwangmin ChoiSchool of Informatics, Indiana University, Bloomington, Indiana, USA.
Aye WollamThe Genome Institute, Washington University in St. Louis, St. Louis, Missouri, USA.
Sandra CliftonThe Genome Institute, Washington University in St. Louis, St. Louis, Missouri, USA.
Xiang QinHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Donna MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Sriram RaghuramanDepartment of Biology, Indiana University, Bloomington, Indiana, USA School of Informatics, Indiana University, Bloomington, Indiana, USA.
Haleh AshkiDepartment of Biology, Indiana University, Bloomington, Indiana, USA School of Informatics, Indiana University, Bloomington, Indiana, USA.
Akif UzmanCollege of Sciences and Technology, University of Houston-Downtown, Houston, Texas, USA.
Sarah K HighlanderHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Bartlomiej G FryszczynCollege of Sciences and Technology, University of Houston-Downtown, Houston, Texas, USA.
George E FoxDepartment of Biology and Biochemistry, University of Houston, Houston, Texas, USA.
Madhan R TirumalaiDepartment of Biology and Biochemistry, University of Houston, Houston, Texas, USA.
Yamei LiuDepartment of Biology and Biochemistry, University of Houston, Houston, Texas, USA.
Sun KimSchool of Informatics, Indiana University, Bloomington, Indiana, USA.
David M KehoeDepartment of Biology, Indiana University, Bloomington, Indiana, USA george.weinstock@jax.org dkehoe@indiana.edu.
George M WeinstockHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA george.weinstock@jax.org dkehoe@indiana.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tolypothrix sp. PCC 7601 is a freshwater filamentous cyanobacterium with complex responses to environmental conditions. Here, we present its 9.96-Mbp draft genome sequence, containing 10,065 putative protein-coding sequences, including 305 predicted two-component system proteins and 27 putative phytochrome-class photoreceptors, the most such proteins in any sequenced genome.

Identifiers

PMID25953173
PMCPMC4424289

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.