Evidence map›Paper›PMID 25952406›Full record

ArticleNature communications2015

Clk post-transcriptional control denoises circadian transcription both temporally and spatially.

Immanuel Lerner, Osnat Bartok, Victoria Wolfson, Jerome S Menet, Uri Weissbein, Shaked Afik, Daniel Haimovich, Chen Gafni, Nir Friedman, Michael Rosbash and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  4. "Time Is out of Joint" in Pluripotent Stem Cells: How and Why.International journal of molecular sciences · 2024
    Review
  5. Article
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  7. TheiScience · 2022
    Article
  8. Article
  9. Regulation of circadian rhythm and sleep by miR-375-timeless interaction in Drosophila.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  10. Article
  11. Heat the Clock: Entrainment and Compensation inJournal of circadian rhythms · 2019
    Article
  12. AMP-Activated Protein Kinase Regulates Circadian Rhythm by Affecting CLOCK inThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  13. PERIOD-controlled deadenylation of theProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Review
  16. Expressing MicroRNAFrontiers in microbiology · 2018
    Article
  17. CLOCK stabilizes CYCLE to initiate clock function inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Involvement of posttranscriptional regulation ofProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Translation of CircRNAs.Molecular cell · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Immanuel LernerBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Osnat BartokBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Victoria WolfsonBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Jerome S MenetHoward Hughes Medical Institute, Biology Department, Brandeis University, 415 South Street, Waltham, Massachusetts 02451, USA.
Uri WeissbeinBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Shaked AfikBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.ORCID http://orcid.org/0000-0002-0287-1550
Daniel HaimovichBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Chen GafniBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Nir FriedmanBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Michael RosbashHoward Hughes Medical Institute, Biology Department, Brandeis University, 415 South Street, Waltham, Massachusetts 02451, USA.
Sebastian KadenerBiological Chemistry Department, Silberman Institute of Life Sciences, Edmund J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.
Hebrew University of Jerusalem · ILHoward Hughes Medical Institute · US

Funding

European Research Council 260911
6 · The paper itself

Abstract

The transcription factor CLOCK (CLK) is essential for the development and maintenance of circadian rhythms in Drosophila. However, little is known about how CLK levels are controlled. Here we show that Clk mRNA is strongly regulated post-transcriptionally through its 3' UTR. Flies expressing Clk transgenes without normal 3' UTR exhibit variable CLK-driven transcription and circadian behaviour as well as ectopic expression of CLK-target genes in the brain. In these flies, the number of the key circadian neurons differs stochastically between individuals and within the two hemispheres of the same brain. Moreover, flies carrying Clk transgenes with deletions in the binding sites for the miRNA bantam have stochastic number of pacemaker neurons, suggesting that this miRNA mediates the deterministic expression of CLK. Overall our results demonstrate a key role of Clk post-transcriptional control in stabilizing circadian transcription, which is essential for proper development and maintenance of circadian rhythms in Drosophila.

Indexed as

Gene Expression RegulationTranscription, Genetic3' Untranslated RegionsAnimalsArgonaute ProteinsBehavior, AnimalBinding SitesBiological ClocksBrainCircadian RhythmCLOCK ProteinsDrosophila melanogasterDrosophila ProteinsFeedback, PhysiologicalFluorescent Antibody TechniqueMicroRNAs3' Untranslated RegionsAGO1 protein, DrosophilaArgonaute Proteinsbantam microRNA, DrosophilaClk protein, DrosophilaCLOCK ProteinsDrosophila ProteinsMicroRNAsRNA, Messenger

Identifiers

PMID25952406
PMCPMC4915573
OpenAlexW646264780

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.