Evidence map›Paper›PMID 25951061›Full record

ArticlePloS one2015

Global transcriptome analysis reveals small RNAs affecting Neisseria meningitidis bacteremia.

Luca Fagnocchi, Silvia Bottini, Giacomo Golfieri, Laura Fantappiè, Francesca Ferlicca, Ana Antunes, Serafina Guadagnuolo, Elena Del Tordello, Emilio Siena, Davide Serruto and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  12. The Hfq regulon ofFEBS open bio · 2017
    Article
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  17. Review
  18. Frontiers in molecular biosciences · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Luca FagnocchiNovartis Vaccines and Diagnotics, Siena, Italy.
Silvia BottiniNovartis Vaccines and Diagnotics, Siena, Italy.
Giacomo GolfieriNovartis Vaccines and Diagnotics, Siena, Italy.
Laura FantappièNovartis Vaccines and Diagnotics, Siena, Italy.
Francesca FerliccaNovartis Vaccines and Diagnotics, Siena, Italy.
Ana AntunesNovartis Vaccines and Diagnotics, Siena, Italy.
Serafina GuadagnuoloNovartis Vaccines and Diagnotics, Siena, Italy.
Elena Del TordelloNovartis Vaccines and Diagnotics, Siena, Italy.
Emilio SienaNovartis Vaccines and Diagnotics, Siena, Italy.
Davide SerrutoNovartis Vaccines and Diagnotics, Siena, Italy.
Vincenzo ScarlatoDepartment of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.
Alessandro MuzziNovartis Vaccines and Diagnotics, Siena, Italy.
Isabel DelanyNovartis Vaccines and Diagnotics, Siena, Italy.
Novartis (Italy) · ITUniversity of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most bacterial small RNAs (sRNAs) are post-transcriptional regulators involved in adaptive responses, controlling gene expression by modulating translation or stability of their target mRNAs often in concert with the RNA chaperone Hfq. Neisseria meningitides, the leading cause of bacterial meningitis, is able to adapt to different host niches during human infection. However, only a few sRNAs and their functions have been fully described to date. Recently, transcriptional expression profiling of N. meningitides in human blood ex vivo revealed 91 differentially expressed putative sRNAs. Here we expanded this analysis by performing a global transcriptome study after exposure of N. meningitides to physiologically relevant stress signals (e.g. heat shock, oxidative stress, iron and carbon source limitation). and we identified putative sRNAs that were differentially expressed in vitro. A set of 98 putative sRNAs was obtained by analyzing transcriptome data and 8 new sRNAs were validated, both by Northern blot and by primer extension techniques. Deletion of selected sRNAs caused attenuation of N. meningitides infection in the in vivo infant rat model, leading to the identification of the first sRNAs influencing meningococcal bacteremia. Further analysis indicated that one of the sRNAs affecting bacteremia responded to carbon source availability through repression by a GntR-like transcriptional regulator. Both the sRNA and the GntR-like regulator are implicated in the control of gene expression from a common network involved in energy metabolism.

Indexed as

TranscriptomeAnimalsBacteremiaBlotting, NorthernNeisseria meningitidisRatsRNA, BacterialRNA, Bacterial

Identifiers

PMID25951061
PMCPMC4423775
OpenAlexW222557582

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.