Evidence map›Paper›PMID 25950913›Full record

ArticlePloS one2015

A post-developmental genetic screen for zebrafish models of inherited liver disease.

Seok-Hyung Kim, Shu-Yu Wu, Jeong-In Baek, Soo Young Choi, Yanhui Su, Charles R Flynn, Joshua T Gamse, Kevin C Ess, Gary Hardiman, Joshua H Lipschutz and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Zebrafish ApoB-Containing Lipoprotein Metabolism: A Closer Look.Arteriosclerosis, thrombosis, and vascular biology · 2024
    Review
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  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Genome mapping of aProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Modeling Lysosomal Storage Diseases in the Zebrafish.Frontiers in molecular biosciences · 2020
    Review
  16. Primary Mammary Organoid Model of Lactation and Involution.Frontiers in cell and developmental biology · 2020
    Article
  17. Review
  18. Article
  19. Article
  20. Zebrafish as a Model for Obesity and Diabetes.Frontiers in cell and developmental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Seok-Hyung KimDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Shu-Yu WuDepartment of Biology, Vanderbilt University, Nashville, TN, 37232, the United States of America.
Jeong-In BaekDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Soo Young ChoiDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Yanhui SuDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Charles R FlynnDepartment of Surgery, Vanderbilt University, Nashville, TN, 37232, the United States of America.
Joshua T GamseDepartment of Biology, Vanderbilt University, Nashville, TN, 37232, the United States of America.
Kevin C EssDepartment of Pediatrics, Vanderbilt University, Nashville, TN, 37232, the United States of America.
Gary HardimanDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Joshua H LipschutzDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America; Department of Medicine, Ralph H. Johnson Veterans Affairs Medical Center, Charleston, SC, 29401, the United States of America.
Naji N AbumradDepartment of Surgery, Vanderbilt University, Nashville, TN, 37232, the United States of America.
Don C RockeyDepartment of Medicine, Medical University of South Carolina, Charleston, SC, 29425, the United States of America.
Medical University of South Carolina · USVanderbilt University · USRalph H. Johnson VA Medical Center · US

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
RYGB Improves Metabolism by Interrupting the Gastric Adipose Tissue AxisR01DK091748 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ABUMRAD, NAJI N · 2011 to 2015
$3.0M
NO AND THE CELLULAR PATHOGENESIS OF PORTAL HYPERTENSIONR01DK057830 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI ROCKEY, DON C. · 2000 to 2012
$2.6M
The Cell and Molecular Biology of Myofibroblasts in Hepatic FibrosisR01DK098819 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ROCKEY, DON C. · 2014 to 2017
$1.3M
The Exocyst in Synthesis, Cystogenesis and TubulogenesisR01DK069909 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LIPSCHUTZ, JOSHUA H · 2005 to 2009
$1.3M
Molecular and Cellular Basis for the Efficacy of Bariatric SurgeryR24DK096527 · NIDDK · VANDERBILT UNIVERSITY · PI ABUMRAD, NAJI N, CONE, ROGER D. · 2013 to 2014
$1.2M
Gene Expression Changes in Early 3D Renal TubulogenesisR21DK070980 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LIPSCHUTZ, JOSHUA H · 2006 to 2007
$310k
NIDDK NIH HHS DK057830NIDDK NIH HHS DK069909NIDDK NIH HHS DK070980NIDDK NIH HHS DK091748NIDDK NIH HHS DK096527NIDDK NIH HHS DK098819NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK057830NIDDK NIH HHS R01 DK069909NIDDK NIH HHS R01 DK091748NIDDK NIH HHS R01 DK098819NIDDK NIH HHS R21 DK070980NIDDK NIH HHS R24 DK096527
6 · The paper itself

Abstract

Nonalcoholic fatty liver disease (NAFLD) is one of the most common causes of chronic liver disease such as simple steatosis, nonalcoholic steatohepatitis (NASH), cirrhosis and fibrosis. However, the molecular pathogenesis and genetic variations causing NAFLD are poorly understood. The high prevalence and incidence of NAFLD suggests that genetic variations on a large number of genes might be involved in NAFLD. To identify genetic variants causing inherited liver disease, we used zebrafish as a model system for a large-scale mutant screen, and adopted a whole genome sequencing approach for rapid identification of mutated genes found in our screen. Here, we report on a forward genetic screen of ENU mutagenized zebrafish. From 250 F2 lines of ENU mutagenized zebrafish during post-developmental stages (5 to 8 days post fertilization), we identified 19 unique mutant zebrafish lines displaying visual evidence of hepatomegaly and/or steatosis with no developmental defects. Histological analysis of mutants revealed several specific phenotypes, including common steatosis, micro/macrovesicular steatosis, hepatomegaly, ballooning, and acute hepatocellular necrosis. This work has identified multiple post-developmental mutants and establishes zebrafish as a novel animal model for post-developmental inherited liver disease.

Indexed as

MutationAnimalsDisease Models, AnimalEthylnitrosoureaGenetic Predisposition to DiseaseGenetic TestingHumansLiverNon-alcoholic Fatty Liver DiseaseZebrafishEthylnitrosourea

Identifiers

PMID25950913
PMCPMC4423964
OpenAlexW271959098

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.