Evidence map›Paper›PMID 25950827›Full record

SynthesisThe Journal of investigative dermatology2015

Identification of Genes Expressed in Hyperpigmented Skin Using Meta-Analysis of Microarray Data Sets.

Lanlan Yin, Sergio G Coelho, Julio C Valencia, Dominik Ebsen, Andre Mahns, Christoph Smuda, Sharon A Miller, Janusz Z Beer, Ludger Kolbe, Vincent J Hearing

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in The Journal of investigative dermatology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Melanocyte loss dominates the vitiligo transcriptome: a rank-based meta-analysis.medRxiv : the preprint server for health sciences · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. TRIM63 is a sensitive and specific biomarker for MiT family aberration-associated renal cell carcinoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Lanlan YinLaboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Sergio G CoelhoLaboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Julio C ValenciaLaboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Dominik EbsenLaboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Andre MahnsR&D Skin Research, Beiersdorf AG, Hamburg, Germany.
Christoph SmudaR&D Skin Research, Beiersdorf AG, Hamburg, Germany.
Sharon A MillerCenter for Devices and Radiological Health, Food and Drug Administration, Silver Spring, Maryland, USA.
Janusz Z BeerCenter for Devices and Radiological Health, Food and Drug Administration, Silver Spring, Maryland, USA.
Ludger KolbeR&D Skin Research, Beiersdorf AG, Hamburg, Germany. Electronic address: Ludger.Kolbe@Beiersdorf.com.
Vincent J HearingLaboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
National Cancer Institute · USBeiersdorf (Germany) · DECenter for Devices and Radiological Health · USNational Institutes of Health · US

Funding

Characterization of Pigmentary Disorders and Melanoma TargetingZ01BC010785 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HEARING, VINCENT J · 2007 to 2008
$762k
Intramural NIH HHS Z01 BC010785
6 · The paper itself

Abstract

More than 375 genes have been identified that are involved in regulating skin pigmentation and these act during development, survival, differentiation, and/or responses of melanocytes to the environment. Many of these genes have been cloned, and disruptions of their functions are associated with various pigmentary diseases; however, many remain to be identified. We have performed a series of microarray analyses of hyperpigmented compared with less pigmented skin to identify genes responsible for these differences. The rationale and goal for this study was to perform a meta-analysis on these microarray databases to identify genes that may be significantly involved in regulating skin phenotype either directly or indirectly that might not have been identified due to subtle differences by any of these individual studies alone. The meta-analysis demonstrates that 1,271 probes representing 921 genes are differentially expressed at significant levels in the 5 microarray data sets compared, providing new insights into the variety of genes involved in determining skin phenotype. Immunohistochemistry was used to validate two of these markers at the protein level (TRIM63 and QPCT), and we discuss the possible functions of these genes in regulating skin physiology.

Indexed as

Databases, GeneticGene Expression RegulationMicroarray AnalysisCarrier ProteinsGene Expression ProfilingGenome-Wide Association StudyHumansHyperpigmentationMuscle ProteinsReproducibility of ResultsSkin PigmentationTripartite Motif ProteinsUbiquitin-Protein LigasesUp-RegulationCarrier ProteinsMuscle ProteinsTRIM63 protein, humanTripartite Motif Proteinsubiquinone-binding proteinsUbiquitin-Protein Ligases

Identifiers

PMID25950827
PMCPMC4567955
OpenAlexW1582553511

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.