Evidence map›Paper›PMID 25948753›Full record

ArticleBiology open2015

Regulation of lipid droplet dynamics in Saccharomyces cerevisiae depends on the Rab7-like Ypt7p, HOPS complex and V1-ATPase.

Isabelle Bouchez, Marie Pouteaux, Michel Canonge, Mélanie Genet, Thierry Chardot, Alain Guillot, Marine Froissard

Open access · goldAbstract read
In one paragraph

Article in Biology open, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  12. The Peroxygenase Activity of theFrontiers in microbiology · 2018
    Article
  13. Regulation and Functions of Autophagic Lipolysis.Trends in endocrinology and metabolism: TEM · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Isabelle BouchezInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France isabelle.bouchez@versailles.inra.fr.
Marie PouteauxInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France.
Michel CanongeInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France.
Mélanie GenetInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France.
Thierry ChardotInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France.
Alain GuillotMICALIS PAPPSO, UMR 1319 INRA, Domaine de Vilvert 78352, Jouy-en-Josas cedex, France MICALIS PAPPSO, UMR 1319 AgroParisTech, Domaine de Vilvert 78352, Jouy-en-Josas cedex, France.
Marine FroissardInstitut Jean-Pierre Bourgin IJPB, UMR 1318 INRA, Saclay Plant Sciences, route de St Cyr (RD 10), 78026, Versailles cedex, France Institut Jean-Pierre Bourgin IJPB, UMR 1318 AgroParisTech, route de St Cyr (RD 10), 78026, Versailles cedex, France.
AgroParisTech · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has now been clearly shown that lipid droplets (LDs) play a dynamic role in the cell. This was reinforced by LD proteomics which suggest that a significant number of trafficking proteins are associated with this organelle. Using microscopy, we showed that LDs partly co-localize with the vacuole in S. cerevisiae. Immunoblot experiments confirmed the association of the vacuolar Rab GTPase Rab7-like Ypt7p with LDs. We observed an increase in fatty acid content and LD number in ypt7Δ mutant and also changes in LD morphology and intra LD fusions, revealing a direct role for Ypt7p in LD dynamics. Using co-immunoprecipitation, we isolated potential Ypt7p partners including, Vma13p, the H subunit of the V1 part of the vacuolar (H+) ATPase (V-ATPase). Deletion of the VMA13 gene, as well as deletion of three other subunits of the V1 part of the V-ATPase, also increased the cell fatty acid content and LD number. Mutants of the Homotypic fusion and vacuole protein sorting (HOPS) complex showed similar phenotypes. Here, we demonstrated that LD dynamics and membrane trafficking between the vacuole and LDs are regulated by the Rab7-like Ypt7p and are impaired when the HOPS complex and the V1 domain of the V-ATPase are defective.

Indexed as

Lipid dropletRab GTPaseVacuoleV-ATPaseYpt7p

Identifiers

PMID25948753
PMCPMC4571102
OpenAlexW2230135021

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.