Evidence map›Paper›PMID 25948607›Full record

ArticleJournal of clinical microbiology2015

Mycobacterium abscessus Complex Identification with Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.

Theofano Panagea, David H Pincus, Dorothy Grogono, Melissa Jones, Josephine Bryant, Julian Parkhill, R Andres Floto, Peter Gilligan

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
  6. Article
  7. Short SignatureMicrobiology spectrum · 2022
    Article
  8. Article
  9. Review
  10. An Improved Method for Rapid Detection ofFrontiers in chemistry · 2021
    Article
  11. Article
  12. Identification of Mycobacterium abscessus species and subspecies using the Cas12a/sgRNA-based nucleic acid detection platform.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Article
  13. PCR amplification of theExperimental and therapeutic medicine · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Theofano PanageaSismanogleio-A.Flemig General Hospital, Athens, Greece University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
David H PincusbioMérieux, Inc., Hazelwood, Missouri, USA.
Dorothy GrogonoCambridge Centre for Lung Infection, Papworth Hospital, Cambridge, United Kingdom University of Cambridge, Cambridge, United Kingdom.
Melissa JonesUNC Health Care, Chapel Hill, North Carolina, USA.
Josephine BryantWellcome Trust Sanger Institute, Hinxton, United Kingdom.ORCID http://orcid.org/0000-0002-0149-5768
Julian ParkhillWellcome Trust Sanger Institute, Hinxton, United Kingdom.ORCID http://orcid.org/0000-0002-7069-5958
R Andres FlotoCambridge Centre for Lung Infection, Papworth Hospital, Cambridge, United Kingdom Cambridge Institute for Medical Research, University of Cambridge, Cambridge, United Kingdom.
Peter GilliganUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA UNC Health Care, Chapel Hill, North Carolina, USA gilliganncphd@gmail.com.

Funding

Wellcome Trust 100140
6 · The paper itself

Abstract

We determined that the Vitek MS Plus matrix-assisted laser desorption ionization-time of flight mass spectrometry using research-use-only (RUO) v.4.12 and in vitro-diagnostic (IVD) v.3.0 databases accurately identified 41 Mycobacterium abscessus subsp. abscessus and 13 M. abscessus subsp. massiliense isolates identified by whole-genome sequencing to the species but not the subspecies level, from Middlebrook 7H11 and Burkholderia cepacia selective agars. Peak analysis revealed three peaks potentially able to differentiate between subspecies.

Indexed as

HumansMicrobiological TechniquesMycobacterium Infections, NontuberculousNontuberculous MycobacteriaSpectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization

Identifiers

PMID25948607
PMCPMC4473197

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.