ArticleBMC genomics2015
Identification and distribution of the NBS-LRR gene family in the Cassava genome.
Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.
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86 citing papers in PubMed, 215 citations in OpenAlex.
- Distinct Evolutionary Constraints Shape TNL and CNL Immune Receptors in Wild and Cultivated Tomato.Biology · 2026Article
- Comparative analysis of PRR receptors and R genes reveals structural and functional divergence between wild, ancestral, and commercial citrus species.BMC genomics · 2026Article
- GeneFamily: a comprehensive mammalian gene family database with extensive annotation and interactive visualization.Nucleic acids research · 2026Article
- Genome-wide characterization of NBS-encoding genes inFrontiers in genetics · 2026Article
- Evolutionary and Functional Insights into Rice Universal Stress Proteins in Response to Abiotic Stresses.Biology · 2025Article
- The haplotype-resolved assembly of COL40 a cassava (Manihot esculenta) line with broad-spectrum resistance against viruses causing Cassava brown streak disease unveils a region of highly repeated elements on chromosome 12.G3 (Bethesda, Md.) · 2025Article
- Genome-wide identification and characterization of NBS-LRR gene family in tobacco (Nicotiana benthamiana).Scientific reports · 2025Article
- Genome-wide identification, and gene expression analysis of NBS-LRR domain containing R genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genome-wide characterization and analysis of rice DUF247 gene family.BMC genomics · 2024Article
- Genomic and Expression Analysis of Cassava (Genes · 2024Article
- Genome-wide identification analysis in wild-typeFrontiers in genetics · 2024Article
- Genome-wide identification of bZIP gene family and expression analysis of BhbZIP58 under heat stress in wax gourd.BMC plant biology · 2023Article
- Bulk segregant analysis coupled with transcriptomics and metabolomics revealed key regulators of bacterial leaf blight resistance in rice.BMC plant biology · 2023Article
- Karyotype evolution of the Asterids insights from the first genome sequences of the family Cornaceae.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Identification, characterization, and validation of NBS-encoding genes in grass pea.Frontiers in genetics · 2023Article
- Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources.Frontiers in plant science · 2023Article
- Identification and characterization of the cupin_1 domain-containing proteins in ma bamboo (Frontiers in plant science · 2023Article
- Genome-wide identification, characterization, and evolutionary analysis of NBS genes and their association with disease resistance in Musa spp.Functional & integrative genomics · 2022Article
- RXam2, a NLR from cassava (Manihot esculenta) contributes partially to the quantitative resistance to Xanthomonas phaseoli pv. manihotis.Plant molecular biology · 2022Article
- Late blight resistance genes in potato breeding.Planta · 2022Review
26 more citing papers are in PubMed but not listed here.
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPlant resistance genes (R genes) exist in large families and usually contain both a nucleotide-binding site domain and a leucine-rich repeat domain, denoted NBS-LRR. The genome sequence of cassava (Manihot esculenta) is a valuable resource for analysing the genomic organization of resistance genes in this crop.
resultsWith searches for Pfam domains and manual curation of the cassava gene annotations, we identified 228 NBS-LRR type genes and 99 partial NBS genes. These represent almost 1% of the total predicted genes and show high sequence similarity to proteins from other plant species. Furthermore, 34 contained an N-terminal toll/interleukin (TIR)-like domain, and 128 contained an N-terminal coiled-coil (CC) domain. 63% of the 327 R genes occurred in 39 clusters on the chromosomes. These clusters are mostly homogeneous, containing NBS-LRRs derived from a recent common ancestor.
conclusionsThis study provides insight into the evolution of NBS-LRR genes in the cassava genome; the phylogenetic and mapping information may aid efforts to further characterize the function of these predicted R genes.
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