Evidence map›Paper›PMID 25947383›Full record

ArticleThe Journal of biological chemistry2015

Feedback Control of Snf1 Protein and Its Phosphorylation Is Necessary for Adaptation to Environmental Stress.

Hsiang-En Hsu, Tzu-Ning Liu, Chung-Shu Yeh, Tien-Hsien Chang, Yi-Chen Lo, Cheng-Fu Kao

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. The Epigenetic Pathways to Ribosomal DNA Silencing.Microbiology and molecular biology reviews : MMBR · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hsiang-En HsuFrom the Graduate Institute of Life Sciences, National Defense Medical Center, Taipei 11490, Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taipei, Taiwan.
Tzu-Ning Liuthe Institute of Food Science and Technology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei 10617.
Chung-Shu Yehthe Institute of Biochemistry and Molecular Biology, National Yang Ming University, Taipei 11221, and the Genomics Research Center and.
Tien-Hsien Changthe Institute of Biochemistry and Molecular Biology, National Yang Ming University, Taipei 11221, and the Genomics Research Center and.
Yi-Chen Lothe Institute of Food Science and Technology, College of Bio-Resources and Agriculture, National Taiwan University, Taipei 10617, loyichen@ntu.edu.tw.
Cheng-Fu KaoFrom the Graduate Institute of Life Sciences, National Defense Medical Center, Taipei 11490, Institute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taipei, Taiwan ckao@gate.sinica.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Snf1, a member of the AMP-activated protein kinase family, plays a critical role in metabolic energy control in yeast cells. Snf1 activity is activated by phosphorylation of Thr-210 on the activation loop of its catalytic subunit; following activation, Snf1 regulates stress-responsive transcription factors. Here, we report that the level of Snf1 protein is dramatically decreased in a UBP8- and UBP10-deleted yeast mutant (ubp8Δ ubp10Δ), and this is independent of transcriptional regulation and proteasome-mediated degradation. Surprisingly, most Snf1-mediated functions, including glucose limitation regulation, utilization of alternative carbon sources, stress responses, and aging, are unaffected in this strain. Snf1 phosphorylation in ubp8Δ ubp10Δ cells is hyperactivated upon stress, which may compensate for the loss of the Snf1 protein and protect cells against stress and aging. Furthermore, artificial elevation of Snf1 phosphorylation (accomplished through deletion of REG1, which encodes a protein that regulates Snf1 dephosphorylation) restored Snf1 protein levels and the regulation of Snf1 activity in ubp8Δ ubp10Δ cells. Our results reveal the existence of a feedback loop that controls Snf1 protein level and its phosphorylation, which is masked by Ubp8 and Ubp10 through an unknown mechanism. We propose that this dynamic modulation of Snf1 phosphorylation and its protein level may be important for adaptation to environmental stress.

Indexed as

Adaptation, BiologicalFeedback, PhysiologicalGene Expression Regulation, FungalMutationPhosphorylationProtein Serine-Threonine KinasesSaccharomyces cerevisiaeProtein Serine-Threonine KinasesSNF1-related protein kinasesAMP-activated kinase (AMPK)metabolismprotein phosphorylationReg1signal transductionSnf1stressThr-210 phosphorylationUbp10Ubp8

Identifiers

PMID25947383
PMCPMC4505426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.